Wall clock time and date at job start Mon Mar 30 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 C 1.40505 * 119.84034 * 299.72100 * 12 2 1 14 14 C 1.36012 * 119.71469 * 179.78000 * 13 12 2 15 15 C 1.40950 * 119.32896 * 0.47668 * 14 13 12 16 16 N 1.32510 * 132.33529 * 179.77844 * 15 14 13 17 17 C 1.33586 * 109.16478 * 179.97438 * 16 15 14 18 18 C 1.35186 * 108.61453 * 0.02562 * 17 16 15 19 19 Cl 1.73606 * 126.41128 * 179.97438 * 18 17 16 20 20 N 1.36806 * 107.17236 * 359.97438 * 18 17 16 21 21 C 1.34919 * 119.84869 * 119.99753 * 12 2 1 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 26 26 H 1.08000 * 120.14383 * 0.02562 * 13 12 2 27 27 H 1.08003 * 120.33823 * 180.22739 * 14 13 12 28 28 H 1.08003 * 125.68932 * 180.02562 * 17 16 15 29 29 H 1.08006 * 119.69441 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 6 2.0324 -0.7103 -1.2305 13 6 1.6958 -2.0571 -1.4467 14 6 2.1469 -2.6944 -2.5604 15 6 2.9558 -1.9931 -3.4772 16 7 3.5278 -2.3504 -4.6178 17 6 4.2000 -1.3092 -5.1164 18 6 4.0562 -0.2603 -4.2758 19 17 4.7390 1.3231 -4.4776 20 7 3.2719 -0.6801 -3.2365 21 6 2.8079 -0.0515 -2.1165 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.9032 -0.5282 4.4375 26 1 1.0783 -2.5830 -0.7336 27 1 1.8912 -3.7285 -2.7385 28 1 4.7642 -1.3060 -6.0373 29 1 3.0646 0.9823 -1.9380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260490382.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:19 Heat of formation + Delta-G solvation = 80.730998 kcal Electronic energy + Delta-G solvation = -15587.367101 eV Core-core repulsion = 12923.774915 eV Total energy + Delta-G solvation = -2663.592186 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.58158 -37.85594 -36.68070 -34.34227 -33.22572 -31.73159 -28.85716 -28.36011 -25.25064 -23.53662 -22.88118 -21.66768 -20.16511 -17.85549 -16.57524 -16.40097 -15.87887 -15.52111 -14.88631 -14.37845 -14.13123 -13.64671 -13.01272 -12.51795 -12.38763 -12.25854 -11.83836 -11.59718 -11.55150 -11.20265 -11.04916 -10.65463 -10.31983 -10.20094 -9.99746 -9.62980 -9.35542 -8.74942 -8.34617 -7.53221 -6.24434 -4.27136 1.10824 1.46814 1.67807 2.93992 3.00872 3.14828 3.24741 3.28424 3.82530 4.24426 4.44024 4.71953 5.07568 5.08289 5.31775 5.37250 5.52896 5.78244 5.98694 6.15861 6.22009 6.34708 6.50484 6.51962 6.63468 6.75637 6.84525 7.12640 7.25950 7.48790 7.90396 8.29307 8.77469 9.34697 10.87865 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030179 B = 0.006420 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.587037 B = 4360.057411 C = 4849.498583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.518 4.518 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.266 1.266 12 C -0.035 4.035 13 C -0.057 4.057 14 C -0.105 4.105 15 C 0.241 3.759 16 N -0.498 5.498 17 C 0.057 3.943 18 C -0.045 4.045 19 Cl -0.013 7.013 20 N -0.347 5.347 21 C 0.020 3.980 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.032 0.968 25 H 0.267 0.733 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.184 0.816 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 2.144 -12.880 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.058 0.942 4 C -0.556 4.556 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.191 1.191 12 C -0.038 4.038 13 C -0.081 4.081 14 C -0.125 4.125 15 C -0.002 4.002 16 N -0.218 5.218 17 C -0.098 4.098 18 C -0.184 4.184 19 Cl 0.015 6.985 20 N -0.019 5.019 21 C -0.101 4.101 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.201 0.799 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.271 1.575 -13.064 13.162 hybrid contribution -0.306 1.906 0.679 2.046 sum -0.034 3.480 -12.385 12.865 Atomic orbital electron populations 1.22171 0.97673 1.01379 0.99107 1.18288 0.92385 0.96131 0.90329 0.94226 1.20827 1.32936 1.14050 0.87755 0.90337 1.24963 0.95518 0.96567 0.95687 1.69871 1.44882 1.40080 0.98070 0.86861 0.80651 0.83616 0.77168 1.20349 1.22321 1.19133 1.19949 0.94406 0.94227 0.95176 1.21270 0.97439 0.93984 0.95401 1.20271 0.98591 1.00617 0.92980 1.20816 1.01958 0.81516 0.95921 1.70855 1.15122 1.27816 1.08003 1.22174 1.01034 0.86822 0.99801 1.21444 1.10018 0.91475 0.95463 1.98353 1.82453 1.21488 1.96246 1.42574 1.32014 1.12079 1.15233 1.21537 1.02032 0.99670 0.86882 0.92325 0.93549 0.94866 0.92316 0.83120 0.83122 0.79936 0.82328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.49 37.16 0.32 -2.47 15 2 C 0.05 1.01 2.06 -92.92 -0.19 0.81 15 3 H 0.04 0.84 6.87 -51.93 -0.36 0.48 15 4 C -0.52 -13.14 8.82 -34.44 -0.30 -13.45 15 5 H 0.08 2.19 7.84 -52.48 -0.41 1.77 15 6 C 0.08 2.01 5.45 -17.82 -0.10 1.92 15 7 N -0.89 -25.63 13.96 55.43 0.77 -24.86 15 8 Si 0.89 20.28 24.37 -169.99 -4.14 16.13 15 9 H -0.28 -6.14 6.87 56.52 0.39 -5.75 15 10 H -0.30 -6.89 7.11 56.52 0.40 -6.49 15 11 H -0.27 -5.76 6.53 56.52 0.37 -5.39 15 12 C -0.04 -0.65 4.69 -104.95 -0.49 -1.14 15 13 C -0.06 -0.96 8.73 -39.53 -0.35 -1.31 15 14 C -0.10 -1.65 10.11 -39.35 -0.40 -2.05 15 15 C 0.24 4.20 7.81 -155.98 -1.22 2.99 15 16 N -0.50 -8.56 11.32 -12.73 -0.14 -8.70 15 17 C 0.06 0.85 11.81 -17.88 -0.21 0.64 15 18 C -0.04 -0.69 7.60 -16.42 -0.12 -0.82 15 19 Cl -0.01 -0.18 29.29 -51.86 -1.52 -1.69 15 20 N -0.35 -6.00 2.95 -59.46 -0.18 -6.18 15 21 C 0.02 0.35 10.54 -16.63 -0.18 0.17 15 22 H 0.06 1.05 7.42 -51.93 -0.39 0.67 15 23 H 0.05 0.94 3.27 -51.93 -0.17 0.77 15 24 H 0.03 0.55 8.14 -51.93 -0.42 0.12 15 25 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 26 H 0.15 2.42 7.63 -52.49 -0.40 2.02 15 27 H 0.15 1.96 8.06 -52.48 -0.42 1.54 15 28 H 0.18 2.04 8.06 -52.48 -0.42 1.62 15 29 H 0.16 2.55 7.87 -52.48 -0.41 2.14 15 LS Contribution 261.98 15.07 3.95 3.95 Total: -1.00 -28.62 261.98 -7.09 -35.71 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -2.59 Total: 0.36 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -3.24 Total: -14.72 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.45 Total: -39.74 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.14 Total: 16.13 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.52 Total: -1.69 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.62 -7.09 -35.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490382.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.439 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds