Wall clock time and date at job start Mon Mar 30 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 C 1.40505 * 119.84034 * 299.72100 * 12 2 1 14 14 C 1.36012 * 119.71469 * 179.78000 * 13 12 2 15 15 C 1.40950 * 119.32896 * 0.47668 * 14 13 12 16 16 N 1.32510 * 132.33529 * 179.77844 * 15 14 13 17 17 C 1.33586 * 109.16478 * 179.97438 * 16 15 14 18 18 C 1.35186 * 108.61453 * 0.02562 * 17 16 15 19 19 Cl 1.73606 * 126.41128 * 179.97438 * 18 17 16 20 20 N 1.36806 * 107.17236 * 359.97438 * 18 17 16 21 21 C 1.34919 * 119.84869 * 119.99753 * 12 2 1 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 26 26 H 1.08000 * 120.14383 * 0.02562 * 13 12 2 27 27 H 1.08003 * 120.33823 * 180.22739 * 14 13 12 28 28 H 1.08003 * 125.68932 * 180.02562 * 17 16 15 29 29 H 1.08006 * 119.69441 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 6 2.0324 -0.7103 -1.2305 13 6 1.6958 -2.0571 -1.4467 14 6 2.1469 -2.6944 -2.5604 15 6 2.9558 -1.9931 -3.4772 16 7 3.5278 -2.3504 -4.6178 17 6 4.2000 -1.3092 -5.1164 18 6 4.0562 -0.2603 -4.2758 19 17 4.7390 1.3231 -4.4776 20 7 3.2719 -0.6801 -3.2365 21 6 2.8079 -0.0515 -2.1165 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.9032 -0.5282 4.4375 26 1 1.0783 -2.5830 -0.7336 27 1 1.8912 -3.7285 -2.7385 28 1 4.7642 -1.3060 -6.0373 29 1 3.0646 0.9823 -1.9380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260490382.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:18 Heat of formation + Delta-G solvation = 65.022070 kcal Electronic energy + Delta-G solvation = -15588.048291 eV Core-core repulsion = 12923.774915 eV Total energy + Delta-G solvation = -2664.273376 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.84609 -39.23242 -37.80055 -35.95335 -34.55700 -33.55833 -30.25702 -29.62574 -27.08522 -24.91116 -24.25633 -22.92756 -21.69687 -19.31141 -18.30694 -17.75356 -17.19509 -16.99092 -16.44474 -15.61346 -15.51199 -14.97564 -14.78538 -14.11244 -13.87561 -13.63982 -13.17153 -12.98745 -12.84107 -12.62699 -12.50676 -12.27832 -11.87641 -11.67193 -11.34647 -11.25870 -11.16342 -10.73721 -9.67950 -8.79882 -8.28187 -6.33892 -0.18459 0.16685 0.50936 1.35228 1.40704 1.50026 1.69876 1.74966 2.33837 2.50904 3.07826 3.21622 3.47087 3.79545 4.01374 4.07975 4.30179 4.43523 4.62527 4.75839 4.78144 4.91670 5.06566 5.09544 5.31756 5.42511 5.47872 5.58418 5.68630 5.89839 6.27804 6.65133 6.72763 7.31361 8.87804 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030179 B = 0.006420 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.587037 B = 4360.057411 C = 4849.498583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 H 0.042 0.958 4 C -0.511 4.511 5 H 0.039 0.961 6 C 0.018 3.982 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.264 1.264 10 H -0.305 1.305 11 H -0.243 1.243 12 C -0.051 4.051 13 C -0.070 4.070 14 C -0.093 4.093 15 C 0.219 3.781 16 N -0.512 5.512 17 C 0.059 3.941 18 C -0.052 4.052 19 Cl 0.008 6.992 20 N -0.355 5.355 21 C 0.021 3.979 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.266 0.734 26 H 0.153 0.847 27 H 0.177 0.823 28 H 0.219 0.781 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 3.226 -14.915 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.060 0.940 4 C -0.548 4.548 5 H 0.057 0.943 6 C -0.179 4.179 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.190 1.190 10 H -0.234 1.234 11 H -0.167 1.167 12 C -0.054 4.054 13 C -0.093 4.093 14 C -0.113 4.113 15 C -0.023 4.023 16 N -0.233 5.233 17 C -0.095 4.095 18 C -0.191 4.191 19 Cl 0.036 6.964 20 N -0.028 5.028 21 C -0.100 4.100 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.170 0.830 27 H 0.194 0.806 28 H 0.235 0.765 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.248 2.660 -15.140 15.374 hybrid contribution -0.011 1.520 1.175 1.921 sum -0.260 4.179 -13.965 14.580 Atomic orbital electron populations 1.22099 0.95904 1.02141 0.99985 1.18161 0.93820 0.95690 0.89296 0.94017 1.21063 1.31333 1.12697 0.89754 0.94256 1.25782 0.97104 0.99710 0.95340 1.70028 1.47420 1.42424 0.98696 0.85906 0.79329 0.80176 0.77328 1.19011 1.23365 1.16658 1.19764 0.95739 0.94974 0.94917 1.21267 0.98335 0.93645 0.96094 1.20529 0.97275 1.01551 0.91959 1.21161 1.02689 0.81948 0.96527 1.70862 1.15569 1.28788 1.08060 1.22814 1.00273 0.85864 1.00559 1.21814 1.09581 0.92734 0.94977 1.98362 1.82019 1.19946 1.96102 1.42710 1.32397 1.12215 1.15485 1.21590 1.01420 1.00105 0.86866 0.91835 0.94502 0.91899 0.92495 0.82969 0.80609 0.76489 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 8.49 71.98 0.61 -4.56 15 2 C 0.05 2.02 2.06 -12.29 -0.03 2.00 15 3 H 0.04 1.68 6.87 -2.39 -0.02 1.66 15 4 C -0.51 -26.28 8.82 25.60 0.23 -26.05 15 5 H 0.04 2.28 7.84 -2.91 -0.02 2.25 15 6 C 0.02 0.99 5.45 84.65 0.46 1.45 15 7 N -0.95 -56.04 13.96 21.45 0.30 -55.74 15 8 Si 0.95 41.32 24.37 68.60 1.67 42.99 15 9 H -0.26 -10.93 6.87 99.48 0.68 -10.25 15 10 H -0.31 -13.72 7.11 99.48 0.71 -13.02 15 11 H -0.24 -9.59 6.53 99.48 0.65 -8.94 15 12 C -0.05 -1.86 4.69 -20.08 -0.09 -1.95 15 13 C -0.07 -2.30 8.73 22.30 0.19 -2.10 15 14 C -0.09 -2.83 10.11 22.42 0.23 -2.61 15 15 C 0.22 7.30 7.81 134.09 1.05 8.35 15 16 N -0.51 -16.55 11.32 -194.18 -2.20 -18.75 15 17 C 0.06 1.61 11.81 83.72 0.99 2.60 15 18 C -0.05 -1.51 7.60 83.21 0.63 -0.88 15 19 Cl 0.01 0.18 29.29 -2.72 -0.08 0.10 15 20 N -0.36 -11.68 2.95 -342.05 -1.01 -12.69 15 21 C 0.02 0.71 10.54 83.19 0.88 1.59 15 22 H 0.06 2.18 7.42 -2.39 -0.02 2.16 15 23 H 0.04 1.39 3.27 -2.39 -0.01 1.38 15 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 26 H 0.15 4.87 7.63 -2.91 -0.02 4.85 15 27 H 0.18 4.26 8.06 -2.91 -0.02 4.23 15 28 H 0.22 4.08 8.06 -2.91 -0.02 4.06 15 29 H 0.17 5.15 7.87 -2.91 -0.02 5.13 15 Total: -1.00 -61.70 261.98 4.92 -56.77 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.09 Total: 9.48 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 5.15 Total: -22.16 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.91 Total: -87.18 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.67 Total: 42.99 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.08 Total: 0.10 kcal Total: -61.70 4.92 -56.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260490382.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.797 kcal (2) G-P(sol) polarization free energy of solvation -61.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds