Wall clock time and date at job start Mon Mar 30 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75293 * 124.30807 * 2 1 4 4 C 1.75899 * 92.19191 * 179.97438 * 3 2 1 5 5 C 1.39692 * 109.69153 * 0.02562 * 4 3 2 6 6 C 1.41213 * 118.84171 * 179.97438 * 5 4 3 7 7 C 1.36103 * 120.49980 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.61270 * 359.72930 * 7 6 5 9 9 C 1.37706 * 120.15345 * 0.54851 * 8 7 6 10 10 F 1.35104 * 119.92972 * 179.72447 * 9 8 7 11 11 C 1.31843 * 124.29959 * 179.97438 * 2 1 3 12 12 C 1.50693 * 122.55772 * 0.05908 * 11 2 1 13 13 C 1.50709 * 109.47320 * 89.97371 * 12 11 2 14 14 H 1.08005 * 119.99377 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00099 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99905 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 120.00155 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46600 * 90.00182 * 17 15 13 19 19 H 1.48500 * 109.47196 * 210.00083 * 17 15 13 20 20 H 1.48498 * 109.47201 * 330.00076 * 17 15 13 21 21 H 1.09007 * 109.47131 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47539 * 120.02023 * 1 2 3 23 23 H 1.09005 * 109.47600 * 240.02493 * 1 2 3 24 24 H 1.07999 * 119.74829 * 180.02562 * 6 5 4 25 25 H 1.07998 * 119.69037 * 179.97438 * 7 6 5 26 26 H 1.07998 * 119.92895 * 180.29984 * 8 7 6 27 27 H 1.09000 * 109.47509 * 209.97513 * 12 11 2 28 28 H 1.09000 * 109.47056 * 329.97821 * 12 11 2 29 29 H 0.97006 * 119.99879 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4950 1.4480 0.0000 4 6 3.9848 0.5128 0.0008 5 6 3.6842 -0.8514 0.0004 6 6 4.7457 -1.7828 0.0004 7 6 6.0384 -1.3569 0.0002 8 6 6.3359 -0.0011 -0.0056 9 6 5.3212 0.9298 0.0001 10 9 5.6161 2.2483 0.0000 11 6 2.2499 -1.0892 0.0005 12 6 1.6577 -2.4748 -0.0002 13 6 1.4608 -2.9364 -1.4213 14 1 1.7374 -2.2908 -2.2419 15 6 0.9277 -4.1825 -1.6738 16 7 0.7564 -4.5854 -2.9140 17 14 0.4500 -5.2992 -0.2545 18 1 -0.9638 -5.0443 0.1215 19 1 0.6047 -6.7174 -0.6668 20 1 1.3294 -5.0235 0.9099 21 1 -0.3634 1.0277 -0.0005 22 1 -0.3634 -0.5141 -0.8898 23 1 -0.3634 -0.5135 0.8902 24 1 4.5300 -2.8410 -0.0003 25 1 6.8400 -2.0806 0.0006 26 1 7.3657 0.3245 -0.0106 27 1 2.3330 -3.1589 0.5137 28 1 0.6963 -2.4593 0.5131 29 1 0.3810 -5.4620 -3.0917 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495958.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:32 Heat of formation + Delta-G solvation = -16.231543 kcal Electronic energy + Delta-G solvation = -15450.585922 eV Core-core repulsion = 12764.912869 eV Total energy + Delta-G solvation = -2685.673052 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.75064 -39.23106 -36.00070 -32.75188 -31.02883 -30.32089 -29.12940 -26.24292 -23.51195 -22.40271 -21.51135 -18.56161 -17.88535 -16.86601 -16.19019 -15.99293 -15.52092 -15.02762 -14.49013 -14.29495 -13.63752 -13.32938 -12.83784 -12.42598 -12.33404 -12.30199 -12.09171 -11.60783 -11.40447 -11.06074 -10.77625 -10.54938 -10.52459 -10.08641 -9.97456 -9.45187 -8.90723 -8.64810 -8.12004 -7.16855 -6.13542 -4.13385 0.98193 1.32636 1.82676 2.36167 2.71411 3.22668 3.31676 3.32899 3.90129 4.34698 4.35013 4.86339 5.01679 5.17022 5.25630 5.45718 5.59941 5.74355 5.91729 6.05638 6.08515 6.19762 6.33607 6.50139 6.54558 6.65949 6.79780 6.99471 7.04451 7.32867 7.60077 8.42716 8.91705 9.45925 10.99232 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.007612 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.538396 B = 3677.606788 C = 4365.317423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.168 4.168 3 S 0.064 5.936 4 C -0.180 4.180 5 C -0.025 4.025 6 C -0.073 4.073 7 C -0.104 4.104 8 C -0.147 4.147 9 C 0.122 3.878 10 F -0.141 7.141 11 C -0.045 4.045 12 C 0.037 3.963 13 C -0.512 4.512 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.873 3.127 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.264 1.264 21 H 0.056 0.944 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 8.012 7.635 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.283 4.283 3 S 0.329 5.671 4 C -0.295 4.295 5 C -0.034 4.034 6 C -0.092 4.092 7 C -0.125 4.125 8 C -0.168 4.168 9 C 0.098 3.902 10 F -0.119 7.119 11 C -0.055 4.055 12 C -0.002 4.002 13 C -0.550 4.550 14 H 0.092 0.908 15 C -0.129 4.129 16 N -0.536 5.536 17 Si 0.700 3.300 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.189 1.189 21 H 0.075 0.925 22 H 0.107 0.893 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.152 0.848 26 H 0.154 0.846 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.876 9.482 7.519 13.453 hybrid contribution 0.164 -1.846 0.475 1.913 sum 6.040 7.636 7.994 12.597 Atomic orbital electron populations 1.20309 0.87629 1.01501 1.03945 1.23574 1.00001 0.94106 1.10590 1.83784 0.93691 1.08908 1.80688 1.22632 0.96182 0.98354 1.12378 1.19157 0.93978 0.90551 0.99740 1.20946 0.90942 1.00165 0.97161 1.20472 0.96682 0.94625 1.00715 1.20887 0.98116 0.92984 1.04792 1.16824 0.90798 0.77640 1.04944 1.91470 1.93934 1.32450 1.94094 1.19946 0.89574 0.97928 0.98066 1.18541 0.95564 0.87265 0.98865 1.20849 1.42361 1.01557 0.90204 0.90829 1.24955 0.95045 0.97550 0.95397 1.69895 1.44828 1.20154 1.18674 0.86874 0.79541 0.80285 0.83272 1.20070 1.21176 1.18881 0.92476 0.89261 0.90845 0.84378 0.84829 0.84618 0.95297 0.95287 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 9.33 36.00 0.34 -0.91 15 2 C -0.17 -3.19 6.38 -36.21 -0.23 -3.43 15 3 S 0.06 1.11 23.19 -107.50 -2.49 -1.38 15 4 C -0.18 -3.30 6.46 -38.38 -0.25 -3.55 15 5 C -0.03 -0.49 6.01 -105.38 -0.63 -1.12 15 6 C -0.07 -1.25 9.73 -39.22 -0.38 -1.63 15 7 C -0.10 -1.46 9.95 -40.14 -0.40 -1.86 15 8 C -0.15 -2.05 10.01 -39.56 -0.40 -2.45 15 9 C 0.12 2.01 7.32 -39.12 -0.29 1.72 15 10 F -0.14 -2.27 17.27 2.25 0.04 -2.23 15 11 C -0.05 -0.95 5.16 -103.68 -0.53 -1.48 15 12 C 0.04 0.85 3.89 -29.03 -0.11 0.74 15 13 C -0.51 -13.85 9.65 -34.44 -0.33 -14.18 15 14 H 0.07 2.23 7.98 -52.48 -0.42 1.81 15 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 16 N -0.90 -26.61 13.96 55.43 0.77 -25.83 15 17 Si 0.87 20.42 27.47 -169.99 -4.67 15.75 15 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 20 H -0.26 -5.88 6.54 56.52 0.37 -5.51 15 21 H 0.06 0.79 8.13 -51.93 -0.42 0.37 15 22 H 0.09 1.61 8.14 -51.93 -0.42 1.19 15 23 H 0.07 1.12 7.84 -51.93 -0.41 0.72 15 24 H 0.14 2.34 7.64 -52.49 -0.40 1.93 15 25 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 26 H 0.14 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.03 0.65 6.65 -51.93 -0.35 0.31 15 28 H 0.03 0.64 6.63 -51.93 -0.34 0.30 15 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -29.51 269.44 -8.38 -37.89 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -2.77 Total: -2.03 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -3.32 Total: -26.23 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.83 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.51 -8.38 -37.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495958.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.658 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds