Wall clock time and date at job start Mon Mar 30 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 N 1.30238 * 126.11185 * 269.69828 * 11 10 9 13 13 N 1.39874 * 110.08292 * 179.84343 * 12 11 10 14 14 H 0.96996 * 125.46593 * 180.16498 * 13 12 11 15 15 C 1.37040 * 109.07277 * 0.42473 * 13 12 11 16 16 C 1.39298 * 133.84101 * 179.79151 * 15 13 12 17 17 C 1.36601 * 119.87340 * 179.97438 * 16 15 13 18 18 C 1.38938 * 120.83416 * 0.02562 * 17 16 15 19 19 C 1.36589 * 120.61066 * 0.02562 * 18 17 16 20 20 Cl 1.73594 * 120.19462 * 180.02562 * 19 18 17 21 21 C 1.40046 * 119.61227 * 359.97107 * 19 18 17 22 22 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08000 * 120.06161 * 359.93902 * 16 15 13 28 28 H 1.08008 * 119.58148 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.69668 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5285 -2.6368 0.0001 12 7 6.2961 -2.6424 -1.0520 13 7 7.6404 -2.6368 -0.6657 14 1 8.3995 -2.6371 -1.2696 15 6 7.7132 -2.6367 0.7027 16 6 8.7677 -2.6361 1.6129 17 6 8.5088 -2.6357 2.9541 18 6 7.2025 -2.6364 3.4273 19 6 6.1482 -2.6381 2.5588 20 17 4.5204 -2.6384 3.1618 21 6 6.3882 -2.6385 1.1791 22 1 -0.4849 0.8402 0.0004 23 1 3.8751 -0.6798 0.8895 24 1 3.8745 -0.6809 -0.8904 25 1 3.6584 -3.1503 0.8903 26 1 3.6578 -3.1507 -0.8897 27 1 9.7880 -2.6365 1.2588 28 1 9.3300 -2.6356 3.6557 29 1 7.0189 -2.6357 4.4916 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260499093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:03 Heat of formation + Delta-G solvation = 44.126910 kcal Electronic energy + Delta-G solvation = -15466.647475 eV Core-core repulsion = 12801.468017 eV Total energy + Delta-G solvation = -2665.179458 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.34346 -38.48507 -37.31682 -36.05642 -34.25868 -32.28954 -30.90797 -30.34188 -27.52396 -24.05643 -23.40137 -23.14378 -20.78373 -19.10913 -18.73989 -17.91933 -16.55669 -16.45477 -15.92276 -15.72734 -15.44938 -14.96741 -14.73217 -14.38765 -13.82143 -13.48795 -13.09981 -13.00658 -12.57253 -12.32205 -12.12352 -12.08760 -11.97564 -11.78720 -11.36301 -11.31606 -10.81097 -10.75438 -9.74787 -8.94730 -8.28393 -6.30983 -0.20896 0.39866 1.20629 1.32979 1.33607 1.35503 1.46725 1.71695 2.35434 2.65064 3.06960 3.41436 3.59247 3.79351 4.00294 4.33573 4.41939 4.49800 4.61986 4.63230 4.81714 4.95038 5.23711 5.26103 5.36373 5.37945 5.46301 5.63904 5.74941 6.28257 6.36418 6.57853 6.74688 7.32692 8.88143 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.007296 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.006281 B = 3837.027525 C = 4263.784836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.521 4.521 8 H 0.042 0.958 9 C 0.011 3.989 10 C -0.029 4.029 11 C 0.110 3.890 12 N -0.278 5.278 13 N -0.500 5.500 14 H 0.455 0.545 15 C 0.132 3.868 16 C -0.133 4.133 17 C -0.049 4.049 18 C -0.150 4.150 19 C 0.019 3.981 20 Cl -0.068 7.068 21 C -0.204 4.204 22 H 0.267 0.733 23 H 0.019 0.981 24 H 0.007 0.993 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.170 0.830 28 H 0.184 0.816 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.415 -5.191 7.025 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.559 4.559 8 H 0.060 0.940 9 C -0.028 4.028 10 C -0.068 4.068 11 C -0.067 4.067 12 N -0.093 5.093 13 N -0.216 5.216 14 H 0.302 0.698 15 C 0.014 3.986 16 C -0.155 4.155 17 C -0.069 4.069 18 C -0.170 4.170 19 C -0.010 4.010 20 Cl -0.039 7.039 21 C -0.213 4.213 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.026 0.974 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.187 0.813 28 H 0.201 0.799 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 22.175 -5.098 5.747 23.468 hybrid contribution -0.335 0.708 0.200 0.808 sum 21.840 -4.390 5.946 23.057 Atomic orbital electron populations 1.70044 1.07928 1.28014 1.52706 1.25807 0.95473 1.02814 0.94267 0.85844 0.79536 0.79368 0.79112 1.19365 1.20353 1.17894 1.21307 0.91097 0.93463 1.50057 0.93997 1.19300 0.94437 0.92971 0.96083 1.20049 0.84305 0.99262 1.03186 1.23820 0.96863 0.97116 0.88937 1.76535 0.88415 1.20837 1.23477 1.45874 1.05425 1.66707 1.03641 0.69757 1.19147 0.94775 0.99113 0.85535 1.20399 0.97750 1.05680 0.91675 1.21175 0.96404 0.94218 0.95109 1.21022 0.91311 1.04138 1.00538 1.20474 0.87037 1.02189 0.91287 1.98417 1.21450 1.96515 1.87504 1.19784 0.93406 1.15023 0.93099 0.92446 0.96258 0.97428 0.89532 0.91178 0.81254 0.79856 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.96 21.45 0.30 -59.93 15 2 C 0.01 0.82 5.47 84.65 0.46 1.28 15 3 Si 0.94 46.21 27.47 68.60 1.88 48.09 15 4 H -0.27 -12.79 7.11 99.48 0.71 -12.09 15 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 15 6 H -0.25 -12.07 6.54 99.48 0.65 -11.42 15 7 C -0.52 -30.86 9.66 25.60 0.25 -30.62 15 8 H 0.04 2.68 7.99 -2.91 -0.02 2.66 15 9 C 0.01 0.54 4.02 29.85 0.12 0.66 15 10 C -0.03 -1.25 5.26 29.85 0.16 -1.09 15 11 C 0.11 4.25 6.68 44.78 0.30 4.54 15 12 N -0.28 -10.07 12.55 -43.71 -0.55 -10.62 15 13 N -0.50 -13.31 7.37 -51.54 -0.38 -13.69 15 14 H 0.45 8.17 8.96 -213.47 -1.91 6.26 15 15 C 0.13 3.44 7.34 39.21 0.29 3.72 15 16 C -0.13 -2.21 10.03 22.14 0.22 -1.99 15 17 C -0.05 -0.71 9.96 22.05 0.22 -0.49 15 18 C -0.15 -3.11 9.74 22.05 0.21 -2.90 15 19 C 0.02 0.57 6.32 22.32 0.14 0.72 15 20 Cl -0.07 -2.29 26.66 -2.72 -0.07 -2.36 15 21 C -0.20 -6.80 6.21 -20.23 -0.13 -6.92 15 22 H 0.27 15.82 8.31 -92.71 -0.77 15.05 15 23 H 0.02 0.97 7.20 -2.39 -0.02 0.95 15 24 H 0.01 0.38 7.57 -2.39 -0.02 0.36 15 25 H 0.09 3.70 6.26 -2.39 -0.01 3.69 15 26 H 0.07 3.05 8.14 -2.39 -0.02 3.03 15 27 H 0.17 1.44 8.06 -2.91 -0.02 1.41 15 28 H 0.18 0.98 8.06 -2.91 -0.02 0.96 15 29 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 Total: -1.00 -73.39 268.06 2.65 -70.75 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -0.78 Total: 0.84 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 2.25 Total: -33.08 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -0.63 Total: -84.24 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.88 Total: 48.09 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.07 Total: -2.36 kcal Total: -73.39 2.65 -70.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.873 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds