Wall clock time and date at job start Mon Mar 30 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00334 * 2 1 4 4 H 1.48506 * 109.46882 * 270.00184 * 3 2 1 5 5 H 1.48495 * 109.47043 * 29.99623 * 3 2 1 6 6 H 1.48494 * 109.47383 * 150.00171 * 3 2 1 7 7 C 1.37885 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99674 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47096 * 180.02562 * 10 9 7 12 12 C 1.33992 * 126.90669 * 264.97524 * 11 10 9 13 13 O 1.34447 * 110.15372 * 180.02562 * 12 11 10 14 14 C 1.34862 * 110.88933 * 359.97438 * 13 12 11 15 15 C 1.38917 * 133.39782 * 179.97438 * 14 13 12 16 16 C 1.37817 * 119.97924 * 180.02562 * 15 14 13 17 17 C 1.38865 * 120.67431 * 359.97438 * 16 15 14 18 18 Cl 1.73601 * 119.87128 * 180.02562 * 17 16 15 19 19 C 1.37819 * 120.25190 * 0.02878 * 17 16 15 20 20 C 1.39434 * 119.58971 * 359.97438 * 19 17 16 21 21 H 0.96999 * 119.99982 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47297 * 59.99887 * 9 7 2 23 23 H 1.09001 * 109.47543 * 300.00288 * 9 7 2 24 24 H 1.08994 * 109.46732 * 59.99946 * 10 9 7 25 25 H 1.08995 * 109.46690 * 300.00365 * 10 9 7 26 26 H 1.07998 * 124.92742 * 0.02562 * 12 11 10 27 27 H 1.08006 * 120.01481 * 0.05614 * 15 14 13 28 28 H 1.07994 * 119.66255 * 180.28190 * 16 15 14 29 29 H 1.07990 * 120.20918 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4916 -4.9672 0.0033 12 6 1.1701 -5.7103 1.0709 13 8 0.4976 -6.8087 0.6853 14 6 0.3472 -6.8348 -0.6547 15 6 -0.2563 -7.7287 -1.5302 16 6 -0.2478 -7.4775 -2.8853 17 6 0.3594 -6.3352 -3.3902 18 17 0.3573 -6.0391 -5.1008 19 6 0.9637 -5.4359 -2.5385 20 6 0.9615 -5.6794 -1.1656 21 1 -0.4850 0.8400 -0.0004 22 1 0.6239 -2.5575 -0.8880 23 1 0.6245 -2.5563 0.8919 24 1 2.8717 -3.6036 0.8926 25 1 2.8718 -3.6052 -0.8872 26 1 1.4156 -5.4629 2.0931 27 1 -0.7325 -8.6201 -1.1491 28 1 -0.7225 -8.1735 -3.5609 29 1 1.4361 -4.5480 -2.9320 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:37 Heat of formation + Delta-G solvation = 2.561523 kcal Electronic energy + Delta-G solvation = -15125.534147 eV Core-core repulsion = 12426.259527 eV Total energy + Delta-G solvation = -2699.274620 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.22948 -37.99392 -36.14852 -34.74507 -32.66987 -30.65720 -29.82623 -28.75999 -25.14627 -23.29986 -22.23104 -21.54836 -19.49378 -17.29245 -16.90438 -16.24156 -15.92644 -15.83770 -14.48404 -14.22003 -13.99880 -13.45407 -13.12238 -12.81848 -12.54499 -12.15392 -12.02213 -11.33593 -11.22689 -11.11804 -10.96582 -10.73937 -10.63801 -10.05970 -9.86702 -9.36187 -9.14027 -8.38957 -8.36861 -7.85748 -6.02434 -4.06031 0.97747 1.25208 2.17117 2.64324 2.99592 3.30476 3.36969 3.39759 3.67483 4.43601 4.60901 4.73990 5.05785 5.19776 5.33291 5.37582 5.45277 5.74108 5.85363 6.01989 6.21498 6.34278 6.46479 6.52784 6.55543 6.66422 7.01448 7.32835 7.64079 7.76130 7.96697 8.36337 9.00968 9.58406 11.08567 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.005760 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.844504 B = 4860.192580 C = 5826.480936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.050 4.050 11 C -0.140 4.140 12 C -0.015 4.015 13 O -0.196 6.196 14 C 0.053 3.947 15 C -0.100 4.100 16 C -0.091 4.091 17 C -0.058 4.058 18 Cl -0.072 7.072 19 C -0.048 4.048 20 C -0.110 4.110 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.208 0.792 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -15.130 -3.904 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.088 4.088 11 C -0.141 4.141 12 C -0.078 4.078 13 O -0.097 6.097 14 C 0.005 3.995 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.085 4.085 18 Cl -0.043 7.043 19 C -0.066 4.066 20 C -0.112 4.112 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.266 -15.184 -3.877 15.674 hybrid contribution 0.393 1.202 -0.166 1.275 sum 0.659 -13.982 -4.043 14.570 Atomic orbital electron populations 1.69968 1.06082 1.26674 1.50486 1.25020 0.94825 0.99258 0.95220 0.86597 0.79833 0.83447 0.78150 1.20629 1.21214 1.19838 1.21230 0.93049 0.90897 1.51058 0.92534 1.19076 0.93691 0.90432 0.97588 1.20291 0.97838 0.89143 1.01518 1.21671 1.03331 0.99050 0.90069 1.23772 0.98296 0.85793 0.99965 1.83986 1.63619 1.41503 1.20638 1.19682 1.00608 0.96991 0.82231 1.19715 1.02330 0.99325 0.90484 1.20669 0.99726 0.96426 0.94166 1.20562 1.05214 0.97818 0.84900 1.98355 1.97641 1.95996 1.12343 1.20475 0.97112 0.98466 0.90588 1.19801 1.01876 0.95645 0.93835 0.92938 0.96438 0.96479 0.91736 0.91917 0.77503 0.84491 0.84155 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.74 4.96 -27.88 -0.14 0.61 15 10 C -0.05 -1.02 5.70 -27.88 -0.16 -1.18 15 11 C -0.14 -2.54 5.61 -102.67 -0.58 -3.12 15 12 C -0.01 -0.23 11.89 29.24 0.35 0.12 15 13 O -0.20 -3.11 10.58 3.76 0.04 -3.07 15 14 C 0.05 0.84 7.41 -38.49 -0.29 0.55 15 15 C -0.10 -1.27 10.06 -39.48 -0.40 -1.67 15 16 C -0.09 -1.11 9.79 -39.50 -0.39 -1.50 15 17 C -0.06 -0.83 6.32 -39.50 -0.25 -1.08 15 18 Cl -0.07 -0.94 28.95 -51.86 -1.50 -2.44 15 19 C -0.05 -0.78 9.87 -39.29 -0.39 -1.17 15 20 C -0.11 -1.93 6.38 -105.16 -0.67 -2.60 15 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.21 2.52 8.06 -52.49 -0.42 2.10 15 27 H 0.14 1.33 8.06 -52.48 -0.42 0.91 15 28 H 0.14 1.29 8.06 -52.49 -0.42 0.87 15 29 H 0.14 2.33 8.06 -52.49 -0.42 1.91 15 LS Contribution 277.08 15.07 4.18 4.18 Total: -1.00 -30.57 277.08 -7.81 -38.38 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -2.92 Total: -3.07 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -3.31 Total: -24.37 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.57 -7.81 -38.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.944 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds