Wall clock time and date at job start Mon Mar 30 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00334 * 2 1 4 4 H 1.48506 * 109.46882 * 270.00184 * 3 2 1 5 5 H 1.48495 * 109.47043 * 29.99623 * 3 2 1 6 6 H 1.48494 * 109.47383 * 150.00171 * 3 2 1 7 7 C 1.37885 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99674 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47096 * 180.02562 * 10 9 7 12 12 C 1.33992 * 126.90669 * 264.97524 * 11 10 9 13 13 O 1.34447 * 110.15372 * 180.02562 * 12 11 10 14 14 C 1.34862 * 110.88933 * 359.97438 * 13 12 11 15 15 C 1.38917 * 133.39782 * 179.97438 * 14 13 12 16 16 C 1.37817 * 119.97924 * 180.02562 * 15 14 13 17 17 C 1.38865 * 120.67431 * 359.97438 * 16 15 14 18 18 Cl 1.73601 * 119.87128 * 180.02562 * 17 16 15 19 19 C 1.37819 * 120.25190 * 0.02878 * 17 16 15 20 20 C 1.39434 * 119.58971 * 359.97438 * 19 17 16 21 21 H 0.96999 * 119.99982 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47297 * 59.99887 * 9 7 2 23 23 H 1.09001 * 109.47543 * 300.00288 * 9 7 2 24 24 H 1.08994 * 109.46732 * 59.99946 * 10 9 7 25 25 H 1.08995 * 109.46690 * 300.00365 * 10 9 7 26 26 H 1.07998 * 124.92742 * 0.02562 * 12 11 10 27 27 H 1.08006 * 120.01481 * 0.05614 * 15 14 13 28 28 H 1.07994 * 119.66255 * 180.28190 * 16 15 14 29 29 H 1.07990 * 120.20918 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4916 -4.9672 0.0033 12 6 1.1701 -5.7103 1.0709 13 8 0.4976 -6.8087 0.6853 14 6 0.3472 -6.8348 -0.6547 15 6 -0.2563 -7.7287 -1.5302 16 6 -0.2478 -7.4775 -2.8853 17 6 0.3594 -6.3352 -3.3902 18 17 0.3573 -6.0391 -5.1008 19 6 0.9637 -5.4359 -2.5385 20 6 0.9615 -5.6794 -1.1656 21 1 -0.4850 0.8400 -0.0004 22 1 0.6239 -2.5575 -0.8880 23 1 0.6245 -2.5563 0.8919 24 1 2.8717 -3.6036 0.8926 25 1 2.8718 -3.6052 -0.8872 26 1 1.4156 -5.4629 2.0931 27 1 -0.7325 -8.6201 -1.1491 28 1 -0.7225 -8.1735 -3.5609 29 1 1.4361 -4.5480 -2.9320 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:36 Heat of formation + Delta-G solvation = -13.767585 kcal Electronic energy + Delta-G solvation = -15126.242230 eV Core-core repulsion = 12426.259527 eV Total energy + Delta-G solvation = -2699.982703 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.44264 -39.11260 -37.24568 -36.44193 -34.53571 -32.11364 -31.08422 -30.18141 -27.05824 -24.45799 -23.52583 -23.27477 -20.86850 -18.63484 -18.45215 -17.86280 -17.11790 -17.05788 -16.49848 -15.44712 -15.13049 -14.99948 -14.56400 -14.23123 -13.97884 -13.66583 -13.51712 -13.11490 -12.84193 -12.51956 -12.39012 -12.23269 -11.97291 -11.82344 -11.60518 -11.26042 -10.80328 -10.56706 -9.52583 -9.12631 -8.20320 -6.32532 -0.16235 0.09885 1.06265 1.36802 1.40904 1.41493 1.52799 1.83098 2.40581 2.51395 3.12863 3.45596 3.58678 3.90681 4.09098 4.26733 4.32320 4.44170 4.62905 4.80932 4.82927 5.02985 5.05675 5.14535 5.17598 5.40791 5.44487 5.49749 5.69878 5.82628 6.10736 6.21383 6.84605 7.37216 8.91287 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.005760 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.844504 B = 4860.192580 C = 5826.480936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.038 3.962 10 C -0.033 4.033 11 C -0.184 4.184 12 C 0.009 3.991 13 O -0.194 6.194 14 C 0.035 3.965 15 C -0.086 4.086 16 C -0.083 4.083 17 C -0.056 4.056 18 Cl -0.063 7.063 19 C -0.078 4.078 20 C -0.136 4.136 21 H 0.263 0.737 22 H -0.018 1.018 23 H -0.007 1.007 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.242 0.758 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -16.481 -3.829 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.000 4.000 10 C -0.070 4.070 11 C -0.185 4.185 12 C -0.055 4.055 13 O -0.095 6.095 14 C -0.012 4.012 15 C -0.104 4.104 16 C -0.101 4.101 17 C -0.083 4.083 18 Cl -0.034 7.034 19 C -0.097 4.097 20 C -0.138 4.138 21 H 0.072 0.928 22 H 0.000 1.000 23 H 0.011 0.989 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.258 0.742 27 H 0.194 0.806 28 H 0.197 0.803 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.524 -16.553 -3.811 16.994 hybrid contribution 0.264 1.544 -0.248 1.586 sum 0.788 -15.009 -4.059 15.568 Atomic orbital electron populations 1.70113 1.07928 1.27763 1.51596 1.25989 0.95702 1.03401 0.94660 0.85447 0.78797 0.78386 0.78433 1.19997 1.20798 1.18362 1.21699 0.93699 0.92067 1.50630 0.91699 1.18902 0.94021 0.92430 0.94606 1.19925 0.96649 0.88489 1.01959 1.21550 1.05905 0.99287 0.91800 1.24328 0.95809 0.84689 1.00670 1.83996 1.63419 1.41297 1.20796 1.20108 1.01465 0.97337 0.82331 1.20233 1.00584 0.99534 0.90075 1.21125 0.98470 0.95863 0.94646 1.20760 1.04395 0.97925 0.85190 1.98357 1.97548 1.96049 1.11418 1.20460 0.99182 0.99110 0.90979 1.20000 1.02906 0.96727 0.94139 0.92810 0.99990 0.98887 0.90272 0.92373 0.74249 0.80617 0.80341 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.23 15 2 C 0.00 0.02 5.46 84.66 0.46 0.48 15 3 Si 0.97 44.26 29.54 68.60 2.03 46.29 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 7 C -0.54 -30.86 9.11 25.60 0.23 -30.62 15 8 H 0.06 3.49 7.74 -2.91 -0.02 3.46 15 9 C 0.04 2.01 4.96 29.85 0.15 2.15 15 10 C -0.03 -1.37 5.70 29.85 0.17 -1.20 15 11 C -0.18 -6.81 5.61 -18.60 -0.10 -6.91 15 12 C 0.01 0.27 11.89 66.85 0.79 1.06 15 13 O -0.19 -5.84 10.58 -9.45 -0.10 -5.94 15 14 C 0.04 1.07 7.41 22.98 0.17 1.24 15 15 C -0.09 -1.94 10.06 22.33 0.22 -1.71 15 16 C -0.08 -1.79 9.79 22.32 0.22 -1.57 15 17 C -0.06 -1.55 6.32 22.32 0.14 -1.40 15 18 Cl -0.06 -1.57 28.95 -2.72 -0.08 -1.65 15 19 C -0.08 -2.67 9.87 22.46 0.22 -2.44 15 20 C -0.14 -4.87 6.38 -20.21 -0.13 -5.00 15 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 15 22 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 15 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 15 24 H 0.08 2.98 8.14 -2.39 -0.02 2.96 15 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 26 H 0.24 5.34 8.06 -2.91 -0.02 5.32 15 27 H 0.18 2.57 8.06 -2.91 -0.02 2.54 15 28 H 0.18 2.48 8.06 -2.91 -0.02 2.46 15 29 H 0.12 4.45 8.06 -2.92 -0.02 4.43 15 Total: -1.00 -67.91 277.08 5.84 -62.07 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.16 Total: 2.39 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 2.55 Total: -45.92 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.28 Total: -57.23 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.10 Total: -5.94 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -67.91 5.84 -62.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.300 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds