Wall clock time and date at job start Mon Mar 30 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35115 * 126.41069 * 2 1 4 4 C 1.50706 * 125.68871 * 0.25061 * 3 2 1 5 5 C 1.50700 * 109.46452 * 269.71068 * 4 3 2 6 6 H 1.08001 * 120.00764 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99896 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00479 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99958 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47226 * 89.99834 * 9 7 5 11 11 H 1.48493 * 109.47331 * 210.00067 * 9 7 5 12 12 H 1.48504 * 109.46912 * 330.00347 * 9 7 5 13 13 N 1.33504 * 108.62045 * 179.97438 * 3 2 1 14 14 C 1.32558 * 109.15652 * 0.02562 * 13 3 2 15 15 C 1.41034 * 132.32592 * 180.02562 * 14 13 3 16 16 Cl 1.73598 * 120.34823 * 359.94886 * 15 14 13 17 17 C 1.36121 * 119.30285 * 179.97438 * 15 14 13 18 18 C 1.40461 * 119.68737 * 0.02562 * 17 15 14 19 19 C 1.34948 * 120.31081 * 359.97438 * 18 17 15 20 20 N 1.36521 * 120.63133 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47517 * 90.02037 * 1 2 3 22 22 H 1.09007 * 109.47456 * 210.02272 * 1 2 3 23 23 H 1.08999 * 109.47532 * 330.02327 * 1 2 3 24 24 H 1.08994 * 109.47059 * 29.70901 * 4 3 2 25 25 H 1.08994 * 109.46996 * 149.71691 * 4 3 2 26 26 H 0.97001 * 120.00415 * 179.97438 * 8 7 5 27 27 H 1.08000 * 120.15172 * 180.02562 * 17 15 14 28 28 H 1.08000 * 119.84514 * 180.02562 * 18 17 15 29 29 H 1.07998 * 119.68610 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3089 1.0874 0.0000 4 6 1.8457 2.5215 0.0054 5 6 1.6932 3.0052 -1.4137 6 1 1.9096 2.3407 -2.2371 7 6 1.2774 4.2964 -1.6610 8 7 1.1438 4.7185 -2.8993 9 14 0.9024 5.4458 -0.2369 10 1 2.1355 6.1802 0.1444 11 1 -0.1448 6.4157 -0.6462 12 1 0.4186 4.6550 0.9232 13 7 3.5802 0.6795 0.0006 14 6 3.6118 -0.6457 0.0004 15 6 4.6768 -1.5702 0.0012 16 17 6.3212 -1.0139 0.0015 17 6 4.4018 -2.9034 0.0013 18 6 3.0661 -3.3381 -0.0001 19 6 2.0579 -2.4411 -0.0009 20 7 2.3191 -1.1011 0.0001 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5135 24 1 0.8865 2.5915 0.5182 25 1 2.5803 3.1386 0.5226 26 1 0.8509 5.6267 -3.0733 27 1 5.2068 -3.6233 0.0023 28 1 2.8450 -4.3953 0.0004 29 1 1.0347 -2.7866 -0.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260533367.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:16 Heat of formation + Delta-G solvation = 52.814697 kcal Electronic energy + Delta-G solvation = -15512.271372 eV Core-core repulsion = 12847.468645 eV Total energy + Delta-G solvation = -2664.802727 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.80384 -38.72766 -37.56984 -35.28968 -34.65749 -33.14522 -31.12719 -30.15042 -27.43288 -25.41435 -23.76708 -23.00714 -21.12962 -19.01763 -18.39033 -17.95168 -17.06500 -16.85943 -16.31446 -16.02870 -14.92968 -14.59066 -14.23465 -14.05790 -13.97251 -13.42539 -13.33271 -13.18091 -13.02482 -12.84469 -12.48788 -12.29234 -12.02042 -11.83176 -11.61702 -11.32805 -10.94103 -10.77040 -9.48412 -8.66693 -8.29055 -6.34211 -0.33470 0.27335 0.88247 1.37924 1.40534 1.51878 1.77045 1.93224 2.36656 2.43826 3.03433 3.17220 3.57944 3.79339 3.93986 4.16919 4.28949 4.39009 4.63500 4.72306 4.86763 4.92090 4.98598 5.08999 5.15101 5.30047 5.48144 5.52760 5.70568 6.18701 6.26136 6.68230 6.97461 7.27792 8.88105 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.027804 B = 0.006541 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.821785 B = 4279.406889 C = 4915.659405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.070 4.070 3 C 0.066 3.934 4 C 0.066 3.934 5 C -0.512 4.512 6 H 0.017 0.983 7 C 0.011 3.989 8 N -0.950 5.950 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.237 1.237 13 N -0.527 5.527 14 C 0.192 3.808 15 C -0.039 4.039 16 Cl -0.045 7.045 17 C -0.067 4.067 18 C -0.133 4.133 19 C 0.055 3.945 20 N -0.362 5.362 21 H 0.069 0.931 22 H 0.098 0.902 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.021 0.979 26 H 0.269 0.731 27 H 0.185 0.815 28 H 0.212 0.788 29 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -20.285 9.614 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.181 4.181 3 C -0.065 4.065 4 C 0.028 3.972 5 C -0.550 4.550 6 H 0.035 0.965 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.160 1.160 13 N -0.248 5.248 14 C -0.052 4.052 15 C -0.069 4.069 16 Cl -0.017 7.017 17 C -0.092 4.092 18 C -0.154 4.154 19 C -0.066 4.066 20 N -0.036 5.036 21 H 0.087 0.913 22 H 0.116 0.884 23 H 0.101 0.899 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.202 0.798 28 H 0.229 0.771 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.240 -19.538 9.515 21.767 hybrid contribution -0.203 0.799 -0.202 0.849 sum 1.037 -18.739 9.313 20.951 Atomic orbital electron populations 1.20202 0.83757 1.04489 1.03157 1.21369 0.95999 0.83953 1.16827 1.21112 0.88170 0.97031 1.00215 1.18002 0.96442 0.86683 0.96086 1.20939 1.45240 0.97743 0.91127 0.96498 1.25941 0.94453 0.99472 0.98759 1.70054 1.48805 1.18547 1.21593 0.85638 0.78529 0.78554 0.79834 1.19902 1.20165 1.15995 1.70576 1.22946 1.07608 1.23640 1.20717 0.85198 0.90721 1.08556 1.19831 0.84228 0.92439 1.10403 1.98359 1.15641 1.90811 1.96853 1.21536 0.99878 0.91799 0.95938 1.21327 0.89277 1.02224 1.02539 1.22643 1.04438 0.78847 1.00691 1.42795 1.07184 1.06968 1.46662 0.91272 0.88382 0.89887 0.92720 0.96105 0.92252 0.79750 0.77139 0.77933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.09 71.23 0.72 -0.98 15 2 C -0.07 -2.71 7.03 41.06 0.29 -2.42 15 3 C 0.07 3.18 6.25 41.59 0.26 3.44 15 4 C 0.07 3.43 4.37 29.10 0.13 3.56 15 5 C -0.51 -31.48 9.65 25.60 0.25 -31.23 15 6 H 0.02 1.17 7.98 -2.91 -0.02 1.15 15 7 C 0.01 0.64 5.47 84.66 0.46 1.11 15 8 N -0.95 -61.19 13.96 21.45 0.30 -60.89 15 9 Si 0.95 45.02 27.47 68.60 1.88 46.91 15 10 H -0.27 -12.82 7.11 99.48 0.71 -12.12 15 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 12 H -0.24 -10.08 6.54 99.48 0.65 -9.43 15 13 N -0.53 -25.95 11.32 -182.33 -2.06 -28.02 15 14 C 0.19 7.60 7.63 134.14 1.02 8.62 15 15 C -0.04 -1.21 6.34 22.46 0.14 -1.07 15 16 Cl -0.05 -1.39 28.99 -2.72 -0.08 -1.47 15 17 C -0.07 -1.28 9.85 22.32 0.22 -1.06 15 18 C -0.13 -1.87 9.98 22.05 0.22 -1.65 15 19 C 0.05 1.09 10.85 83.21 0.90 2.00 15 20 N -0.36 -12.10 2.95 -338.79 -1.00 -13.10 15 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.10 1.91 8.14 -2.38 -0.02 1.90 15 23 H 0.08 2.48 7.13 -2.39 -0.02 2.46 15 24 H 0.05 2.56 6.18 -2.39 -0.01 2.55 15 25 H 0.02 1.10 7.57 -2.39 -0.02 1.08 15 26 H 0.27 15.99 8.31 -92.71 -0.77 15.22 15 27 H 0.19 2.06 8.06 -2.91 -0.02 2.04 15 28 H 0.21 0.63 8.06 -2.91 -0.02 0.60 15 29 H 0.20 2.24 8.06 -2.91 -0.02 2.22 15 Total: -1.00 -83.09 270.57 4.77 -78.32 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: 1.11 Total: -2.07 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.61 Total: -19.69 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -2.76 Total: -102.00 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -83.09 4.77 -78.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533367.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.134 kcal (2) G-P(sol) polarization free energy of solvation -83.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds