Wall clock time and date at job start Mon Mar 30 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33486 * 126.20307 * 2 1 4 4 C 1.30990 * 109.90043 * 179.97438 * 3 2 1 5 5 Cl 1.73596 * 125.37909 * 179.97438 * 4 3 2 6 6 N 1.35588 * 109.24136 * 359.95154 * 4 3 2 7 7 C 1.37133 * 133.18224 * 180.02562 * 6 4 3 8 8 C 1.34644 * 120.53675 * 179.97438 * 7 6 4 9 9 C 1.40858 * 120.63257 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.09330 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46994 * 90.00577 * 10 9 8 12 12 H 1.08011 * 119.99771 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00294 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99968 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00251 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46956 * 60.00146 * 15 13 11 17 17 H 1.48504 * 109.47403 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47399 * 299.99932 * 15 13 11 19 19 C 1.35847 * 119.80890 * 0.02785 * 9 8 7 20 20 C 1.37887 * 126.19755 * 179.89699 * 2 1 3 21 21 H 1.09004 * 109.46976 * 270.10911 * 1 2 3 22 22 H 1.09003 * 109.46829 * 30.10781 * 1 2 3 23 23 H 1.09000 * 109.47663 * 150.10656 * 1 2 3 24 24 H 1.07995 * 119.73478 * 0.24625 * 7 6 4 25 25 H 1.07998 * 119.67979 * 180.02562 * 8 7 6 26 26 H 1.09000 * 109.46590 * 209.99864 * 10 9 8 27 27 H 1.08995 * 109.47030 * 330.00417 * 10 9 8 28 28 H 0.97001 * 120.00173 * 180.02562 * 14 13 11 29 29 H 1.07998 * 120.40923 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0771 0.0000 4 6 3.5527 0.7094 0.0006 5 17 4.9147 1.7858 0.0001 6 7 3.6222 -0.6447 0.0020 7 6 4.6689 -1.5306 0.0035 8 6 4.4419 -2.8578 0.0053 9 6 3.1263 -3.3608 0.0062 10 6 2.8861 -4.8486 0.0076 11 6 2.8064 -5.3432 1.4289 12 1 2.9189 -4.6495 2.2491 13 6 2.5900 -6.6810 1.6822 14 7 2.4526 -7.5256 0.6834 15 14 2.4919 -7.2942 3.4439 16 1 1.3747 -6.6112 4.1442 17 1 2.2540 -8.7600 3.4455 18 1 3.7684 -6.9988 4.1427 19 6 2.0745 -2.5011 0.0047 20 6 2.3213 -1.1127 0.0020 21 1 -0.3633 0.0020 1.0277 22 1 -0.3633 0.8891 -0.5155 23 1 -0.3634 -0.8909 -0.5122 24 1 5.6836 -1.1608 0.0078 25 1 5.2766 -3.5431 0.0069 26 1 1.9495 -5.0659 -0.5057 27 1 3.7067 -5.3495 -0.5059 28 1 2.3000 -8.4668 0.8616 29 1 1.0618 -2.8762 0.0057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553002.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:17 Heat of formation + Delta-G solvation = 49.052863 kcal Electronic energy + Delta-G solvation = -15301.404526 eV Core-core repulsion = 12636.438674 eV Total energy + Delta-G solvation = -2664.965853 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.78904 -38.90169 -37.99266 -35.83702 -34.51003 -32.33156 -31.44509 -29.77686 -26.97014 -25.41018 -24.21544 -22.78815 -21.48697 -18.89705 -18.51280 -17.56125 -17.22322 -16.83515 -16.43204 -15.67481 -15.31641 -14.48851 -14.21785 -14.07525 -13.72832 -13.48387 -13.39309 -13.17915 -12.82702 -12.63771 -12.48927 -12.37306 -12.22950 -11.78786 -11.69418 -11.38568 -11.01912 -10.59387 -10.25203 -8.39073 -8.13600 -6.33069 -0.12038 0.15864 0.19547 1.42822 1.43648 1.51842 1.74824 1.76679 2.35228 2.52590 3.11802 3.43189 3.56306 3.80926 3.91464 4.16673 4.28638 4.60190 4.78660 4.88201 4.96744 5.01898 5.09415 5.18211 5.33748 5.50380 5.56512 5.73201 5.82852 5.97505 6.14908 6.60447 6.78736 7.35894 8.88336 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.005440 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.995308 B = 5145.772502 C = 5535.696388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.012 4.012 3 N -0.447 5.447 4 C 0.170 3.830 5 Cl 0.051 6.949 6 N -0.362 5.362 7 C 0.037 3.963 8 C -0.110 4.110 9 C -0.051 4.051 10 C 0.061 3.939 11 C -0.530 4.530 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.959 3.041 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.103 4.103 20 C 0.024 3.976 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.198 0.802 25 H 0.166 0.834 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.266 0.734 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 13.382 -1.492 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.148 4.148 3 N -0.166 5.166 4 C -0.107 4.107 5 Cl 0.079 6.921 6 N -0.037 5.037 7 C -0.081 4.081 8 C -0.131 4.131 9 C -0.054 4.054 10 C 0.024 3.976 11 C -0.568 4.568 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.565 5.565 15 Si 0.784 3.216 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.122 4.122 20 C -0.086 4.086 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.215 0.785 25 H 0.183 0.817 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.897 14.241 -1.538 14.614 hybrid contribution 0.531 -1.361 0.738 1.637 sum 3.428 12.880 -0.800 13.352 Atomic orbital electron populations 1.20099 0.84245 1.03864 1.03333 1.21370 0.97669 0.85135 1.10606 1.69700 0.98437 1.31062 1.17390 1.22910 0.90821 0.78673 1.18332 1.98378 1.36759 1.59496 1.97511 1.42820 1.07876 1.06007 1.46949 1.22076 0.92587 0.88794 1.04691 1.21120 0.98266 0.93896 0.99782 1.20420 0.92982 0.97677 0.94342 1.18082 0.96763 0.86245 0.96500 1.21287 1.49893 0.93268 0.92314 0.92755 1.25796 0.94643 0.97066 1.01245 1.70043 1.49687 1.03866 1.32906 0.85589 0.79025 0.77141 0.79864 1.19569 1.20787 1.19347 1.20376 1.00917 0.87761 1.03176 1.19661 0.83382 0.95248 1.10280 0.90314 0.89955 0.89825 0.78497 0.81652 0.96912 0.96446 0.92510 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.42 10.44 71.24 0.74 -0.68 15 2 C -0.01 -0.40 7.20 42.23 0.30 -0.10 15 3 N -0.45 -15.22 11.20 -176.72 -1.98 -17.20 15 4 C 0.17 5.38 8.62 179.95 1.55 6.93 15 5 Cl 0.05 1.24 29.27 -2.72 -0.08 1.16 15 6 N -0.36 -11.78 2.97 -340.69 -1.01 -12.79 15 7 C 0.04 1.05 10.93 83.04 0.91 1.96 15 8 C -0.11 -3.57 9.66 22.09 0.21 -3.36 15 9 C -0.05 -2.01 5.08 -19.78 -0.10 -2.11 15 10 C 0.06 2.94 5.11 29.10 0.15 3.09 15 11 C -0.53 -27.96 9.09 25.60 0.23 -27.72 15 12 H 0.05 2.84 7.74 -2.90 -0.02 2.81 15 13 C 0.01 0.62 5.46 84.65 0.46 1.08 15 14 N -0.93 -52.60 13.29 21.44 0.28 -52.31 15 15 Si 0.96 42.09 29.54 68.60 2.03 44.11 15 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 19 C -0.10 -3.79 9.73 22.39 0.22 -3.57 15 20 C 0.02 0.84 6.74 38.73 0.26 1.10 15 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.08 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.20 3.94 8.06 -2.91 -0.02 3.92 15 25 H 0.17 4.75 8.06 -2.91 -0.02 4.73 15 26 H 0.01 0.65 8.08 -2.39 -0.02 0.63 15 27 H 0.02 0.87 8.09 -2.39 -0.02 0.85 15 28 H 0.27 14.31 8.31 -92.71 -0.77 13.54 15 29 H 0.15 5.22 8.06 -2.91 -0.02 5.20 15 Total: -1.00 -61.73 276.46 5.34 -56.39 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.16 Total: 4.03 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 4.94 Total: -23.39 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.70 Total: -82.30 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 17 Polarization: 1.24 SS G_CDS: -0.08 Total: 1.16 kcal Total: -61.73 5.34 -56.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553002.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.439 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds