Wall clock time and date at job start Mon Mar 30 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47099 * 2 1 4 4 C 1.50695 * 109.46517 * 239.99990 * 2 1 3 5 5 H 1.08002 * 120.00272 * 275.01890 * 4 2 1 6 6 C 1.37882 * 119.99861 * 95.02632 * 4 2 1 7 7 N 1.31519 * 120.00183 * 184.91390 * 6 4 2 8 8 Si 1.86796 * 120.00034 * 4.90726 * 6 4 2 9 9 H 1.48503 * 109.46896 * 84.83808 * 8 6 4 10 10 H 1.48499 * 109.47300 * 204.83355 * 8 6 4 11 11 H 1.48501 * 109.47414 * 324.84117 * 8 6 4 12 12 C 1.50702 * 109.46765 * 120.00412 * 2 1 3 13 13 C 1.38400 * 119.81359 * 59.97806 * 12 2 1 14 14 C 1.37859 * 119.69416 * 179.97438 * 13 12 2 15 15 C 1.39276 * 120.24811 * 359.97438 * 14 13 12 16 16 S 1.76239 * 130.56146 * 179.97438 * 15 14 13 17 17 C 1.75783 * 90.58425 * 180.02562 * 16 15 14 18 18 O 1.21631 * 125.07830 * 180.02562 * 17 16 15 19 19 O 1.32213 * 109.83956 * 0.02562 * 17 16 15 20 20 C 1.34491 * 117.12713 * 359.74721 * 19 17 16 21 21 C 1.37613 * 119.80597 * 239.99426 * 12 2 1 22 22 H 1.09008 * 109.46673 * 294.98016 * 1 2 3 23 23 H 1.08997 * 109.47026 * 54.97027 * 1 2 3 24 24 H 1.09000 * 109.47513 * 174.98277 * 1 2 3 25 25 H 0.96997 * 120.00029 * 179.97438 * 7 6 4 26 26 H 1.08003 * 120.15215 * 359.97287 * 13 12 2 27 27 H 1.08008 * 119.87139 * 179.97438 * 14 13 12 28 28 H 1.08003 * 119.67819 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1350 -1.7855 -1.2292 6 6 2.3606 0.0122 -2.3579 7 7 2.7062 -0.6130 -3.4622 8 14 2.3144 1.8791 -2.3171 9 1 3.6001 2.3944 -1.7816 10 1 2.1070 2.3994 -3.6924 11 1 1.1996 2.3278 -1.4446 12 6 2.0323 -0.7105 1.2305 13 6 1.6952 -2.0354 1.4457 14 6 2.1564 -2.6832 2.5719 15 6 2.9585 -2.0094 3.4898 16 16 3.6870 -2.5608 4.9969 17 6 4.4044 -0.9762 5.2508 18 8 5.0973 -0.6668 6.2013 19 8 4.0782 -0.1711 4.2541 20 6 3.3053 -0.6832 3.2799 21 6 2.8233 -0.0380 2.1337 22 1 -0.3633 0.4340 0.9316 23 1 -0.3633 0.5899 -0.8415 24 1 -0.3634 -1.0237 -0.0899 25 1 2.9368 -0.1047 -4.2554 26 1 1.0736 -2.5595 0.7348 27 1 1.8947 -3.7170 2.7430 28 1 3.0789 0.9960 1.9548 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260594065.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:48 Heat of formation + Delta-G solvation = -50.908893 kcal Electronic energy + Delta-G solvation = -15431.351833 eV Core-core repulsion = 12731.802268 eV Total energy + Delta-G solvation = -2699.549564 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.22070 -40.30041 -39.02434 -36.02164 -33.75603 -31.83785 -30.54528 -27.19471 -26.97554 -24.60279 -23.92577 -21.84923 -20.20382 -19.04240 -18.75456 -18.51704 -17.80462 -17.05299 -16.21398 -15.99464 -15.15493 -15.02488 -14.86828 -14.51850 -14.07762 -13.92227 -13.62356 -13.02750 -12.88413 -12.72205 -12.53658 -12.35564 -11.76908 -11.72150 -11.50272 -11.22046 -10.88347 -10.68221 -9.80877 -9.11185 -8.25934 -6.29733 -0.48508 -0.25762 -0.00479 0.23741 0.54979 1.06509 1.38991 1.41832 1.49640 2.37296 2.48942 3.12398 3.29583 3.89515 4.04353 4.18640 4.29399 4.57199 4.70774 4.75853 4.93660 4.98513 5.14823 5.26404 5.37013 5.45636 5.56065 5.62958 5.79098 5.85089 6.32064 6.77527 7.35208 8.89623 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035476 B = 0.005994 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.086307 B = 4670.244306 C = 4983.077162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.036 3.964 3 H 0.044 0.956 4 C -0.504 4.504 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.928 3.072 9 H -0.271 1.271 10 H -0.293 1.293 11 H -0.237 1.237 12 C -0.001 4.001 13 C -0.103 4.103 14 C -0.036 4.036 15 C -0.212 4.212 16 S 0.066 5.934 17 C 0.460 3.540 18 O -0.445 6.445 19 O -0.261 6.261 20 C 0.078 3.922 21 C -0.114 4.114 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.265 0.735 26 H 0.148 0.852 27 H 0.169 0.831 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 -2.062 13.360 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.017 3.983 3 H 0.062 0.938 4 C -0.542 4.542 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.585 5.585 8 Si 0.752 3.248 9 H -0.196 1.196 10 H -0.220 1.220 11 H -0.160 1.160 12 C -0.003 4.003 13 C -0.123 4.123 14 C -0.058 4.058 15 C -0.325 4.325 16 S 0.305 5.695 17 C 0.196 3.804 18 O -0.336 6.336 19 O -0.173 6.173 20 C 0.029 3.971 21 C -0.134 4.134 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.165 0.835 27 H 0.186 0.814 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.537 -2.823 14.402 14.894 hybrid contribution 0.431 1.877 -1.245 2.294 sum -2.106 -0.946 13.157 13.358 Atomic orbital electron populations 1.21921 0.95301 1.01657 1.00128 1.18376 0.94693 0.95535 0.89719 0.93767 1.21142 1.42973 0.94451 0.95660 0.93279 1.25824 0.94439 1.02893 0.94969 1.70023 1.48029 1.37801 1.02639 0.86027 0.80171 0.80988 0.77600 1.19637 1.21967 1.15972 1.20155 0.92183 0.94754 0.93183 1.21235 1.00323 0.93951 0.96805 1.20701 0.93483 1.00723 0.90897 1.22601 1.10838 0.96254 1.02848 1.85880 1.53456 1.11430 1.18721 1.24708 0.83347 0.89401 0.82953 1.90996 1.38143 1.76680 1.27738 1.83114 1.59296 1.44943 1.29927 1.19025 0.95555 0.92045 0.90447 1.20374 1.00519 1.01631 0.90847 0.92648 0.93931 0.92456 0.92613 0.83472 0.81352 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.91 71.98 0.64 -3.88 15 2 C 0.04 1.40 2.13 -12.28 -0.03 1.38 15 3 H 0.04 1.74 5.00 -2.39 -0.01 1.72 15 4 C -0.50 -25.14 8.63 25.60 0.22 -24.92 15 5 H 0.05 2.69 7.64 -2.91 -0.02 2.66 15 6 C 0.02 0.87 5.47 84.66 0.46 1.34 15 7 N -0.95 -55.25 13.96 21.45 0.30 -54.95 15 8 Si 0.93 40.37 26.99 68.60 1.85 42.22 15 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 15 11 H -0.24 -9.21 6.82 99.48 0.68 -8.53 15 12 C 0.00 -0.04 4.76 -19.97 -0.10 -0.13 15 13 C -0.10 -3.06 8.64 22.22 0.19 -2.87 15 14 C -0.04 -0.90 10.06 22.43 0.23 -0.67 15 15 C -0.21 -5.69 6.45 22.63 0.15 -5.54 15 16 S 0.07 1.57 23.38 -56.49 -1.32 0.25 15 17 C 0.46 13.67 8.92 113.37 1.01 14.68 15 18 O -0.44 -14.93 18.05 19.22 0.35 -14.58 15 19 O -0.26 -8.19 10.05 37.31 0.38 -7.81 15 20 C 0.08 2.38 7.06 22.82 0.16 2.54 15 21 C -0.11 -3.66 9.68 22.57 0.22 -3.44 15 22 H 0.05 1.58 8.14 -2.38 -0.02 1.56 15 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.06 1.87 7.56 -2.39 -0.02 1.85 15 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 26 H 0.15 4.24 7.55 -2.91 -0.02 4.21 15 27 H 0.17 2.95 8.06 -2.91 -0.02 2.92 15 28 H 0.14 4.30 7.91 -2.91 -0.02 4.28 15 Total: -1.00 -59.31 262.48 5.87 -53.44 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.16 Total: 2.95 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.16 Total: -21.51 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.30 Total: -54.95 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.72 Total: -22.39 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.85 Total: 42.22 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.32 Total: 0.25 kcal Total: -59.31 5.87 -53.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594065.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.528 kcal (2) G-P(sol) polarization free energy of solvation -59.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds