Wall clock time and date at job start Mon Mar 30 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38404 * 119.81275 * 299.72773 * 12 2 1 14 14 C 1.37868 * 119.69531 * 179.72589 * 13 12 2 15 15 C 1.39279 * 120.24183 * 0.58847 * 14 13 12 16 16 S 1.76242 * 130.56274 * 179.68412 * 15 14 13 17 17 C 1.75779 * 90.58456 * 179.97438 * 16 15 14 18 18 O 1.21636 * 125.07784 * 179.97438 * 17 16 15 19 19 O 1.32217 * 109.84201 * 0.02562 * 17 16 15 20 20 C 1.34488 * 117.12518 * 359.97438 * 19 17 16 21 21 C 1.37618 * 119.80754 * 120.00249 * 12 2 1 22 22 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 23 23 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 24 24 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.07994 * 120.15273 * 0.02562 * 13 12 2 27 27 H 1.07993 * 119.87571 * 180.24728 * 14 13 12 28 28 H 1.08001 * 119.67797 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 6 1.7003 -2.0373 -1.4425 14 6 2.1565 -2.6834 -2.5718 15 6 2.9581 -2.0094 -3.4900 16 16 3.6873 -2.5609 -4.9967 17 6 4.4032 -0.9758 -5.2514 18 8 5.0960 -0.6663 -6.2020 19 8 4.0770 -0.1707 -4.2547 20 6 3.3004 -0.6815 -3.2827 21 6 2.8233 -0.0380 -2.1337 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 0.7164 1.1670 3.4843 26 1 1.0826 -2.5627 -0.7292 27 1 1.8958 -3.7174 -2.7423 28 1 3.0795 0.9957 -1.9544 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260594068.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:49 Heat of formation + Delta-G solvation = -49.423894 kcal Electronic energy + Delta-G solvation = -15378.852758 eV Core-core repulsion = 12679.367588 eV Total energy + Delta-G solvation = -2699.485170 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.21122 -40.26632 -38.99322 -36.08996 -33.38561 -31.77329 -30.19606 -27.19917 -26.94728 -24.54735 -23.99508 -21.92733 -20.26232 -18.74937 -18.52295 -18.41310 -17.70220 -17.02646 -16.37313 -15.93861 -15.08671 -14.98450 -14.87839 -14.53892 -13.87564 -13.63688 -13.27711 -12.87715 -12.82485 -12.74723 -12.44136 -12.23521 -12.06426 -11.70523 -11.38419 -11.26010 -10.77608 -10.44407 -9.79338 -9.09834 -8.08535 -6.22419 -0.47619 -0.24670 0.01555 0.24293 0.56053 1.07723 1.47325 1.48903 1.55184 2.41884 2.56558 3.21174 3.30917 3.96266 4.11977 4.22432 4.33397 4.66611 4.80250 4.92441 5.05843 5.21355 5.23300 5.39544 5.45654 5.49698 5.66431 5.86533 5.96237 6.09055 6.32107 6.86060 7.46289 8.95743 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.040588 B = 0.005316 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.688559 B = 5265.611166 C = 5341.204604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.069 3.931 3 H 0.013 0.987 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.266 1.266 12 C -0.003 4.003 13 C -0.102 4.102 14 C -0.036 4.036 15 C -0.212 4.212 16 S 0.069 5.931 17 C 0.459 3.541 18 O -0.446 6.446 19 O -0.262 6.262 20 C 0.078 3.922 21 C -0.114 4.114 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.043 0.957 25 H 0.262 0.738 26 H 0.150 0.850 27 H 0.172 0.828 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -7.687 -9.668 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.031 0.969 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.191 1.191 12 C -0.005 4.005 13 C -0.122 4.122 14 C -0.057 4.057 15 C -0.326 4.326 16 S 0.308 5.692 17 C 0.195 3.805 18 O -0.336 6.336 19 O -0.174 6.174 20 C 0.029 3.971 21 C -0.134 4.134 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.168 0.832 27 H 0.189 0.811 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.342 -8.355 -10.754 13.685 hybrid contribution 0.385 1.261 1.616 2.086 sum 1.727 -7.094 -9.138 11.697 Atomic orbital electron populations 1.21666 0.96417 1.00144 1.00087 1.17851 0.93791 0.94443 0.88820 0.96918 1.21332 1.31520 1.12635 0.90590 0.92104 1.25643 0.95188 0.95560 1.01671 1.69994 1.37389 1.23849 1.24171 0.85717 0.78597 0.79070 0.78923 1.20172 1.21477 1.19131 1.20324 0.91623 0.94731 0.93814 1.21271 1.00137 0.93818 0.96977 1.20728 0.93444 1.00822 0.90743 1.22608 1.10995 0.96074 1.02898 1.85830 1.53415 1.11214 1.18738 1.24730 0.83357 0.89463 0.82933 1.90995 1.38215 1.76734 1.27681 1.83115 1.59088 1.45109 1.30092 1.19007 0.95629 0.92103 0.90355 1.20355 1.00713 1.01416 0.90872 0.92100 0.95342 0.93772 0.92902 0.83186 0.81098 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.79 71.98 0.63 -4.70 15 2 C 0.07 3.09 2.47 -12.29 -0.03 3.06 15 3 H 0.01 0.63 7.85 -2.39 -0.02 0.61 15 4 C -0.52 -25.60 8.23 25.60 0.21 -25.39 15 5 H 0.06 2.90 7.59 -2.91 -0.02 2.88 15 6 C 0.02 0.95 5.31 84.66 0.45 1.40 15 7 N -0.91 -49.04 11.33 21.45 0.24 -48.80 15 8 Si 0.95 40.40 29.54 68.60 2.03 42.43 15 9 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 15 11 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 12 C 0.00 -0.13 4.72 -19.97 -0.09 -0.22 15 13 C -0.10 -3.11 8.69 22.22 0.19 -2.91 15 14 C -0.04 -0.89 10.06 22.43 0.23 -0.66 15 15 C -0.21 -5.78 6.45 22.63 0.15 -5.64 15 16 S 0.07 1.65 23.38 -56.49 -1.32 0.33 15 17 C 0.46 13.88 8.92 113.37 1.01 14.89 15 18 O -0.45 -15.14 18.05 19.21 0.35 -14.79 15 19 O -0.26 -8.48 10.05 37.31 0.38 -8.11 15 20 C 0.08 2.46 7.06 22.82 0.16 2.62 15 21 C -0.11 -3.91 9.68 22.57 0.22 -3.70 15 22 H 0.06 2.95 6.08 -2.39 -0.01 2.94 15 23 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 24 H 0.04 1.72 7.40 -2.39 -0.02 1.70 15 25 H 0.26 13.52 8.31 -92.70 -0.77 12.75 15 26 H 0.15 4.38 7.58 -2.91 -0.02 4.36 15 27 H 0.17 2.91 8.06 -2.91 -0.02 2.89 15 28 H 0.14 4.61 7.91 -2.91 -0.02 4.59 15 Total: -1.00 -55.09 262.95 5.98 -49.11 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.19 Total: 1.08 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 3.12 Total: -21.25 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.24 Total: -48.80 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.72 Total: -22.90 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -55.09 5.98 -49.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594068.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.317 kcal (2) G-P(sol) polarization free energy of solvation -55.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds