Wall clock time and date at job start Mon Mar 30 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35115 * 126.41128 * 2 1 4 4 C 1.50694 * 125.68755 * 359.97438 * 3 2 1 5 5 C 1.50710 * 109.47029 * 269.99900 * 4 3 2 6 6 H 1.07992 * 119.99725 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99876 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47541 * 90.00293 * 9 7 5 11 11 H 1.48504 * 109.47156 * 210.00406 * 9 7 5 12 12 H 1.48503 * 109.47269 * 330.00065 * 9 7 5 13 13 N 1.33509 * 108.62101 * 179.97438 * 3 2 1 14 14 C 1.32585 * 109.15235 * 359.97438 * 13 3 2 15 15 C 1.40928 * 132.30525 * 179.97438 * 14 13 3 16 16 C 1.36008 * 119.35251 * 180.02562 * 15 14 13 17 17 C 1.40550 * 119.68963 * 359.97438 * 16 15 14 18 18 Cl 1.73603 * 119.86687 * 180.02562 * 17 16 15 19 19 C 1.35054 * 120.27043 * 0.02562 * 17 16 15 20 20 N 1.36534 * 120.59393 * 359.97438 * 19 17 16 21 21 H 1.08996 * 109.46827 * 89.97454 * 1 2 3 22 22 H 1.08997 * 109.47554 * 209.97812 * 1 2 3 23 23 H 1.08996 * 109.46701 * 329.98051 * 1 2 3 24 24 H 1.08999 * 109.47567 * 30.00114 * 4 3 2 25 25 H 1.09004 * 109.47443 * 150.00448 * 4 3 2 26 26 H 0.96997 * 119.99647 * 179.97438 * 8 7 5 27 27 H 1.07997 * 120.32308 * 359.97438 * 15 14 13 28 28 H 1.07998 * 120.15866 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.69926 * 179.72310 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3091 1.0874 0.0000 4 6 1.8459 2.5214 -0.0005 5 6 1.6920 2.9990 -1.4216 6 1 1.9076 2.3308 -2.2422 7 6 1.2749 4.2887 -1.6741 8 7 1.0118 5.1022 -0.6748 9 14 1.0835 4.8805 -3.4354 10 1 -0.2993 4.6066 -3.9022 11 1 1.3472 6.3406 -3.4985 12 1 2.0507 4.1649 -4.3060 13 7 3.5803 0.6795 0.0006 14 6 3.6118 -0.6460 0.0015 15 6 4.6763 -1.5695 0.0019 16 6 4.4031 -2.9019 0.0024 17 6 3.0671 -3.3385 0.0030 18 17 2.7131 -5.0381 0.0042 19 6 2.0577 -2.4413 0.0026 20 7 2.3190 -1.1012 0.0021 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3634 -0.8901 0.5135 23 1 -0.3632 0.8898 0.5141 24 1 0.8871 2.5938 0.5129 25 1 2.5809 3.1409 0.5133 26 1 0.7188 6.0097 -0.8524 27 1 5.6991 -1.2227 0.0010 28 1 5.2088 -3.6210 0.0031 29 1 1.0345 -2.7870 -0.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597834.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:17 Heat of formation + Delta-G solvation = 69.654263 kcal Electronic energy + Delta-G solvation = -15363.804828 eV Core-core repulsion = 12699.732319 eV Total energy + Delta-G solvation = -2664.072509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.45262 -37.76505 -36.29459 -33.70337 -33.23751 -31.23299 -29.84805 -28.01960 -26.08547 -23.85759 -22.46512 -21.81559 -19.67565 -17.17702 -16.76270 -16.42472 -15.86456 -15.57065 -14.71201 -14.48500 -13.43896 -13.17578 -12.95595 -12.47567 -12.43434 -12.19418 -12.02672 -11.81773 -11.27348 -11.16670 -10.96099 -10.70780 -10.63966 -10.56799 -9.93877 -9.44175 -9.34428 -8.41032 -8.08168 -7.35757 -6.03547 -4.06015 0.79130 1.38048 1.72913 3.02054 3.23309 3.31426 3.37994 3.43358 3.86487 4.40219 4.46462 4.60233 4.76123 5.05438 5.28914 5.34679 5.51656 5.68161 5.81287 5.98770 6.01932 6.07256 6.32598 6.39445 6.70856 7.26506 7.28119 7.53716 7.64231 7.92329 8.30874 8.51582 8.96450 9.56704 11.06746 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039989 B = 0.005042 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.030204 B = 5552.142970 C = 5684.644980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.076 4.076 3 C 0.120 3.880 4 C 0.088 3.912 5 C -0.505 4.505 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.475 5.475 14 C 0.197 3.803 15 C -0.053 4.053 16 C -0.117 4.117 17 C -0.074 4.074 18 Cl -0.054 7.054 19 C 0.077 3.923 20 N -0.360 5.360 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.090 0.910 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.262 0.738 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -17.560 2.315 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.186 4.186 3 C -0.011 4.011 4 C 0.050 3.950 5 C -0.544 4.544 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.195 5.195 14 C -0.044 4.044 15 C -0.074 4.074 16 C -0.140 4.140 17 C -0.104 4.104 18 Cl -0.025 7.025 19 C -0.047 4.047 20 N -0.035 5.035 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.109 0.891 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.173 0.827 28 H 0.163 0.837 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.196 -16.947 2.359 17.250 hybrid contribution -0.806 -0.430 -1.018 1.368 sum 1.389 -17.377 1.341 17.484 Atomic orbital electron populations 1.20112 0.86495 1.02648 1.02766 1.21172 0.94717 0.84013 1.18681 1.21874 0.86658 0.97759 0.94819 1.17856 0.96664 0.82271 0.98223 1.20936 1.45130 0.97171 0.91184 0.92711 1.24954 0.95409 0.96545 0.97268 1.69946 1.45978 1.06751 1.30634 0.86521 0.78387 0.77925 0.84782 1.20622 1.21102 1.19897 1.70812 1.22582 1.04968 1.21160 1.21062 0.83642 0.91603 1.08105 1.20159 0.97823 0.90033 0.99374 1.20704 0.94560 0.95630 1.03147 1.19856 0.93950 0.85328 1.11302 1.98361 1.95204 1.11645 1.97309 1.21128 1.00183 0.81349 1.02070 1.42656 1.09526 1.04405 1.46922 0.90991 0.93008 0.89089 0.94300 0.94263 0.92795 0.82725 0.83744 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.09 36.01 0.36 -0.64 15 2 C -0.08 -1.50 7.03 -81.47 -0.57 -2.07 15 3 C 0.12 2.82 6.25 -82.98 -0.52 2.30 15 4 C 0.09 2.30 5.30 -29.03 -0.15 2.15 15 5 C -0.51 -14.31 9.09 -34.43 -0.31 -14.62 15 6 H 0.05 1.57 7.74 -52.49 -0.41 1.17 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 8 N -0.89 -26.19 13.29 55.43 0.74 -25.45 15 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 13 N -0.48 -10.94 11.32 -9.01 -0.10 -11.04 15 14 C 0.20 3.75 7.81 -156.04 -1.22 2.53 15 15 C -0.05 -0.76 10.10 -39.36 -0.40 -1.16 15 16 C -0.12 -1.38 9.86 -39.51 -0.39 -1.77 15 17 C -0.07 -0.90 6.28 -39.84 -0.25 -1.15 15 18 Cl -0.05 -0.54 28.94 -51.86 -1.50 -2.04 15 19 C 0.08 1.06 10.60 -16.59 -0.18 0.89 15 20 N -0.36 -6.40 2.95 -58.42 -0.17 -6.57 15 21 H 0.07 1.13 8.14 -51.93 -0.42 0.70 15 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.09 1.51 7.14 -51.93 -0.37 1.14 15 24 H 0.04 1.01 7.13 -51.93 -0.37 0.64 15 25 H 0.04 1.11 8.14 -51.93 -0.42 0.69 15 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 27 H 0.16 1.85 8.06 -52.49 -0.42 1.43 15 28 H 0.14 1.26 8.06 -52.49 -0.42 0.83 15 29 H 0.16 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 274.14 15.07 4.13 4.13 Total: -1.00 -31.51 274.14 -8.47 -39.98 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: -2.82 Total: -3.69 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.72 Total: -11.94 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.46 Total: -43.06 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.51 -8.47 -39.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597834.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.638 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds