Wall clock time and date at job start Mon Mar 30 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35115 * 126.41128 * 2 1 4 4 C 1.50694 * 125.68755 * 359.97438 * 3 2 1 5 5 C 1.50710 * 109.47029 * 269.99900 * 4 3 2 6 6 H 1.07992 * 119.99725 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99876 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47541 * 90.00293 * 9 7 5 11 11 H 1.48504 * 109.47156 * 210.00406 * 9 7 5 12 12 H 1.48503 * 109.47269 * 330.00065 * 9 7 5 13 13 N 1.33509 * 108.62101 * 179.97438 * 3 2 1 14 14 C 1.32585 * 109.15235 * 359.97438 * 13 3 2 15 15 C 1.40928 * 132.30525 * 179.97438 * 14 13 3 16 16 C 1.36008 * 119.35251 * 180.02562 * 15 14 13 17 17 C 1.40550 * 119.68963 * 359.97438 * 16 15 14 18 18 Cl 1.73603 * 119.86687 * 180.02562 * 17 16 15 19 19 C 1.35054 * 120.27043 * 0.02562 * 17 16 15 20 20 N 1.36534 * 120.59393 * 359.97438 * 19 17 16 21 21 H 1.08996 * 109.46827 * 89.97454 * 1 2 3 22 22 H 1.08997 * 109.47554 * 209.97812 * 1 2 3 23 23 H 1.08996 * 109.46701 * 329.98051 * 1 2 3 24 24 H 1.08999 * 109.47567 * 30.00114 * 4 3 2 25 25 H 1.09004 * 109.47443 * 150.00448 * 4 3 2 26 26 H 0.96997 * 119.99647 * 179.97438 * 8 7 5 27 27 H 1.07997 * 120.32308 * 359.97438 * 15 14 13 28 28 H 1.07998 * 120.15866 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.69926 * 179.72310 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3091 1.0874 0.0000 4 6 1.8459 2.5214 -0.0005 5 6 1.6920 2.9990 -1.4216 6 1 1.9076 2.3308 -2.2422 7 6 1.2749 4.2887 -1.6741 8 7 1.0118 5.1022 -0.6748 9 14 1.0835 4.8805 -3.4354 10 1 -0.2993 4.6066 -3.9022 11 1 1.3472 6.3406 -3.4985 12 1 2.0507 4.1649 -4.3060 13 7 3.5803 0.6795 0.0006 14 6 3.6118 -0.6460 0.0015 15 6 4.6763 -1.5695 0.0019 16 6 4.4031 -2.9019 0.0024 17 6 3.0671 -3.3385 0.0030 18 17 2.7131 -5.0381 0.0042 19 6 2.0577 -2.4413 0.0026 20 7 2.3190 -1.1012 0.0021 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3634 -0.8901 0.5135 23 1 -0.3632 0.8898 0.5141 24 1 0.8871 2.5938 0.5129 25 1 2.5809 3.1409 0.5133 26 1 0.7188 6.0097 -0.8524 27 1 5.6991 -1.2227 0.0010 28 1 5.2088 -3.6210 0.0031 29 1 1.0345 -2.7870 -0.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597834.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:17 Heat of formation + Delta-G solvation = 51.569763 kcal Electronic energy + Delta-G solvation = -15364.589031 eV Core-core repulsion = 12699.732319 eV Total energy + Delta-G solvation = -2664.856712 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.83072 -38.92463 -37.35650 -35.32159 -34.96595 -32.83403 -31.16448 -29.74388 -27.42213 -25.71560 -23.80301 -23.18617 -21.21693 -18.58233 -18.45192 -17.95238 -17.03916 -17.01374 -16.45985 -15.84346 -14.69265 -14.52645 -14.36608 -14.10518 -13.97471 -13.61017 -13.30167 -13.16905 -13.02892 -12.72577 -12.56395 -12.23208 -12.07318 -11.94599 -11.73494 -11.38714 -10.94222 -10.58618 -9.47455 -8.74093 -8.19563 -6.31880 -0.33334 0.16772 0.70024 1.38850 1.41254 1.52077 1.76757 1.83891 2.39159 2.50622 3.10070 3.25193 3.47693 3.62690 3.88622 4.18026 4.20270 4.40375 4.59097 4.72401 4.84441 4.89269 5.04353 5.10789 5.27867 5.38879 5.48145 5.71510 5.72965 6.12250 6.17635 6.75810 6.99097 7.35199 8.90157 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.039989 B = 0.005042 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.030204 B = 5552.142970 C = 5684.644980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.075 4.075 3 C 0.071 3.929 4 C 0.102 3.898 5 C -0.522 4.522 6 H 0.044 0.956 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.274 1.274 13 N -0.532 5.532 14 C 0.192 3.808 15 C -0.076 4.076 16 C -0.082 4.082 17 C -0.066 4.066 18 Cl -0.023 7.023 19 C 0.066 3.934 20 N -0.363 5.363 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.029 0.971 25 H -0.002 1.002 26 H 0.267 0.733 27 H 0.174 0.826 28 H 0.187 0.813 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -20.900 1.389 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.186 4.186 3 C -0.059 4.059 4 C 0.064 3.936 5 C -0.560 4.560 6 H 0.062 0.938 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.051 4.051 15 C -0.097 4.097 16 C -0.105 4.105 17 C -0.097 4.097 18 Cl 0.006 6.994 19 C -0.058 4.058 20 N -0.036 5.036 21 H 0.093 0.907 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.047 0.953 25 H 0.016 0.984 26 H 0.076 0.924 27 H 0.192 0.808 28 H 0.204 0.796 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.125 -20.311 1.440 20.473 hybrid contribution -0.695 0.302 -0.672 1.013 sum 1.430 -20.009 0.768 20.075 Atomic orbital electron populations 1.20167 0.84256 1.03887 1.03297 1.21295 0.95893 0.83776 1.17625 1.21375 0.88153 0.97200 0.99185 1.17443 0.94914 0.84433 0.96818 1.21144 1.45453 0.97601 0.91839 0.93803 1.25838 0.94756 0.96487 1.01811 1.70062 1.46465 1.07177 1.32907 0.85439 0.78914 0.77440 0.79191 1.18938 1.20287 1.19936 1.70604 1.22836 1.07747 1.24097 1.21644 0.85400 0.90995 1.07030 1.20495 0.97632 0.90344 1.01213 1.21218 0.95601 0.95147 0.98566 1.20108 0.93868 0.86730 1.08960 1.98390 1.95097 1.08881 1.97018 1.21718 1.02337 0.79669 1.02031 1.42662 1.08667 1.05510 1.46797 0.90674 0.89071 0.90495 0.95320 0.98350 0.92393 0.80831 0.79564 0.79084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.86 10.09 71.24 0.72 -1.14 15 2 C -0.08 -3.02 7.03 41.06 0.29 -2.73 15 3 C 0.07 3.55 6.25 41.58 0.26 3.81 15 4 C 0.10 5.78 5.30 29.10 0.15 5.94 15 5 C -0.52 -31.08 9.09 25.60 0.23 -30.85 15 6 H 0.04 2.64 7.74 -2.91 -0.02 2.61 15 7 C 0.01 0.56 5.46 84.65 0.46 1.02 15 8 N -0.93 -56.22 13.29 21.45 0.28 -55.94 15 9 Si 0.97 45.20 29.54 68.60 2.03 47.23 15 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 12 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 13 N -0.53 -25.81 11.32 -182.41 -2.06 -27.87 15 14 C 0.19 7.33 7.81 134.10 1.05 8.38 15 15 C -0.08 -2.04 10.10 22.41 0.23 -1.81 15 16 C -0.08 -1.58 9.86 22.32 0.22 -1.36 15 17 C -0.07 -1.34 6.28 22.10 0.14 -1.20 15 18 Cl -0.02 -0.35 28.94 -2.72 -0.08 -0.43 15 19 C 0.07 1.61 10.60 83.23 0.88 2.49 15 20 N -0.36 -12.56 2.95 -338.75 -1.00 -13.55 15 21 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.08 2.64 7.14 -2.39 -0.02 2.63 15 24 H 0.03 1.62 7.13 -2.39 -0.02 1.61 15 25 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 15 26 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 27 H 0.17 3.84 8.06 -2.91 -0.02 3.81 15 28 H 0.19 2.10 8.06 -2.91 -0.02 2.08 15 29 H 0.19 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -73.09 274.14 4.97 -68.12 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: 1.17 Total: -0.09 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 4.63 Total: -17.47 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -2.78 Total: -97.36 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -73.09 4.97 -68.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597834.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.691 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds