Wall clock time and date at job start Mon Mar 30 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30228 * 125.75001 * 2 1 4 4 N 1.40018 * 109.64204 * 179.97438 * 3 2 1 5 5 C 1.46499 * 125.89787 * 179.97438 * 4 3 2 6 6 C 1.36415 * 108.19939 * 359.97438 * 4 3 2 7 7 C 1.40399 * 106.81016 * 359.97438 * 6 4 3 8 8 C 1.40329 * 119.75534 * 179.97438 * 7 6 4 9 9 C 1.38174 * 120.26657 * 0.02562 * 8 7 6 10 10 Cl 1.73595 * 119.59565 * 179.97438 * 9 8 7 11 11 C 1.38134 * 120.80988 * 359.97438 * 9 8 7 12 12 C 1.40544 * 120.28475 * 359.75339 * 11 9 8 13 13 C 1.40892 * 120.31741 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99866 * 150.03659 * 13 12 11 15 15 C 1.39970 * 119.99766 * 330.03158 * 13 12 11 16 16 N 1.30844 * 119.99699 * 163.08919 * 15 13 12 17 17 Si 1.86798 * 120.00330 * 343.09148 * 15 13 12 18 18 H 1.48496 * 109.46966 * 90.70942 * 17 15 13 19 19 H 1.48500 * 109.47013 * 210.71032 * 17 15 13 20 20 H 1.48499 * 109.46791 * 330.71084 * 17 15 13 21 21 H 1.09006 * 109.47292 * 270.04248 * 1 2 3 22 22 H 1.09001 * 109.47290 * 30.04141 * 1 2 3 23 23 H 1.08999 * 109.47564 * 150.04345 * 1 2 3 24 24 H 1.08997 * 109.47403 * 264.35981 * 5 4 3 25 25 H 1.08997 * 109.47304 * 24.36964 * 5 4 3 26 26 H 1.09003 * 109.46624 * 144.36727 * 5 4 3 27 27 H 1.08003 * 119.86949 * 179.97438 * 8 7 6 28 28 H 1.07997 * 119.85970 * 179.97438 * 11 9 8 29 29 H 0.97000 * 119.99816 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2678 1.0569 0.0000 4 7 3.6130 0.6684 0.0006 5 6 4.7675 1.5702 0.0002 6 6 3.6628 -0.6948 0.0015 7 6 2.3345 -1.1496 0.0021 8 6 2.0703 -2.5278 0.0026 9 6 3.1112 -3.4365 0.0031 10 17 2.7643 -5.1375 0.0043 11 6 4.4244 -3.0081 0.0025 12 6 4.7217 -1.6345 -0.0038 13 6 6.0609 -1.1967 -0.0049 14 1 6.3227 -0.2609 -0.4763 15 6 7.0520 -1.9745 0.6050 16 7 8.3133 -1.7591 0.3315 17 14 6.5740 -3.3202 1.8092 18 1 6.3923 -4.5987 1.0761 19 1 7.6460 -3.4796 2.8244 20 1 5.3037 -2.9518 2.4843 21 1 -0.3634 0.0008 1.0277 22 1 -0.3634 0.8896 -0.5145 23 1 -0.3634 -0.8903 -0.5131 24 1 5.1163 1.7136 -1.0224 25 1 4.4776 2.5319 0.4235 26 1 5.5679 1.1360 0.5995 27 1 1.0492 -2.8797 0.0035 28 1 5.2261 -3.7317 0.0032 29 1 9.0000 -2.2984 0.7538 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260612743.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:04 Heat of formation + Delta-G solvation = 65.531534 kcal Electronic energy + Delta-G solvation = -15912.593840 eV Core-core repulsion = 13248.342556 eV Total energy + Delta-G solvation = -2664.251284 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55798 -36.67373 -35.39751 -34.06237 -33.09794 -30.12818 -29.11140 -28.71432 -25.72942 -24.12890 -22.08038 -20.89066 -18.93795 -17.64271 -16.17406 -15.94780 -15.00343 -14.86686 -14.50104 -13.70314 -13.10987 -13.02756 -12.85985 -12.49974 -12.27229 -12.12389 -11.92980 -11.61142 -11.50547 -11.09805 -10.90194 -10.49886 -10.25210 -9.95359 -9.88383 -9.73113 -9.31198 -8.82559 -7.65522 -7.19061 -7.08146 -4.64101 1.85042 2.42646 2.98377 3.01474 3.10210 3.17666 3.25625 3.32057 3.85164 4.27667 5.03857 5.12876 5.40644 5.66075 5.70944 5.85806 5.92342 6.07226 6.11717 6.14120 6.29402 6.41715 6.63577 6.72959 6.92514 7.15999 7.38788 7.42917 7.61791 7.86291 8.01042 8.14414 8.46054 8.52981 9.80550 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.012128 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.046366 B = 2308.242039 C = 3743.820280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.064 3.936 3 N -0.279 5.279 4 N -0.384 5.384 5 C 0.112 3.888 6 C 0.080 3.920 7 C -0.132 4.132 8 C -0.181 4.181 9 C 0.017 3.983 10 Cl -0.116 7.116 11 C -0.257 4.257 12 C 0.107 3.893 13 C -0.438 4.438 14 H 0.099 0.901 15 C 0.086 3.914 16 N -0.794 5.794 17 Si 0.910 3.090 18 H -0.261 1.261 19 H -0.290 1.290 20 H -0.244 1.244 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 0.431 1.000 6.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 N -0.098 5.098 4 N -0.171 5.171 5 C -0.029 4.029 6 C -0.037 4.037 7 C -0.141 4.141 8 C -0.204 4.204 9 C -0.010 4.010 10 Cl -0.088 7.088 11 C -0.280 4.280 12 C 0.101 3.899 13 C -0.465 4.465 14 H 0.117 0.883 15 C -0.135 4.135 16 N -0.416 5.416 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.217 1.217 20 H -0.167 1.167 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.170 1.690 1.004 6.476 hybrid contribution 0.188 -1.579 0.432 1.648 sum -5.982 0.111 1.436 6.153 Atomic orbital electron populations 1.20063 0.87127 1.02663 1.02355 1.22071 0.96133 0.89727 1.02873 1.76446 0.87413 1.23854 1.22133 1.47703 1.03451 1.03410 1.62542 1.21855 0.85479 0.92855 1.02732 1.19173 0.95288 0.83851 1.05349 1.18291 0.91574 0.93340 1.10849 1.19539 0.96659 0.89512 1.14650 1.20207 0.94451 0.81497 1.04877 1.98268 1.95654 1.17491 1.97360 1.20462 0.93746 0.94556 1.19235 1.16659 0.91424 0.89032 0.92809 1.19465 0.89445 1.07325 1.30310 0.88277 1.26172 0.94191 0.96883 0.96282 1.69657 1.01400 1.35898 1.34661 0.86295 0.79512 0.80726 0.79881 1.18684 1.21695 1.16681 0.91077 0.91441 0.90748 0.91982 0.90807 0.88338 0.87199 0.86391 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.45 36.00 0.38 -0.52 15 2 C 0.06 1.25 7.25 -81.97 -0.59 0.65 15 3 N -0.28 -5.80 12.45 33.93 0.42 -5.38 15 4 N -0.38 -8.28 4.05 -65.10 -0.26 -8.54 15 5 C 0.11 2.00 10.18 59.85 0.61 2.61 15 6 C 0.08 1.89 6.83 -83.74 -0.57 1.32 15 7 C -0.13 -2.90 6.10 -106.99 -0.65 -3.56 15 8 C -0.18 -3.81 9.87 -38.82 -0.38 -4.20 15 9 C 0.02 0.37 6.30 -39.64 -0.25 0.12 15 10 Cl -0.12 -2.22 28.92 -51.86 -1.50 -3.72 15 11 C -0.26 -6.11 6.98 -38.75 -0.27 -6.38 15 12 C 0.11 2.61 5.12 -106.75 -0.55 2.06 15 13 C -0.44 -10.84 8.31 -37.93 -0.32 -11.15 15 14 H 0.10 2.46 6.16 -52.49 -0.32 2.14 15 15 C 0.09 2.10 5.42 -17.32 -0.09 2.00 15 16 N -0.79 -19.52 13.93 55.55 0.77 -18.75 15 17 Si 0.91 20.10 24.52 -169.99 -4.17 15.93 15 18 H -0.26 -5.69 6.50 56.52 0.37 -5.33 15 19 H -0.29 -6.13 7.11 56.52 0.40 -5.72 15 20 H -0.24 -5.62 7.00 56.52 0.40 -5.22 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 26 H 0.10 1.82 6.29 -51.93 -0.33 1.49 15 27 H 0.11 2.02 8.06 -52.48 -0.42 1.60 15 28 H 0.12 2.82 4.52 -52.49 -0.24 2.58 15 29 H 0.29 6.50 8.30 -40.82 -0.34 6.16 15 LS Contribution 261.32 15.07 3.94 3.94 Total: -1.00 -27.02 261.32 -6.09 -33.11 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.60 Total: 0.45 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.69 Total: -17.04 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.93 Total: -32.67 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.17 Total: 15.93 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -1.50 Total: -3.72 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.02 -6.09 -33.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612743.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.641 kcal (2) G-P(sol) polarization free energy of solvation -27.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds