Wall clock time and date at job start Mon Mar 30 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31084 * 1 3 3 Si 1.86803 * 119.99793 * 2 1 4 4 H 1.48497 * 109.47103 * 269.99760 * 3 2 1 5 5 H 1.48501 * 109.47186 * 30.00446 * 3 2 1 6 6 H 1.48504 * 109.46945 * 149.99763 * 3 2 1 7 7 C 1.39658 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.41407 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.41954 * 126.58413 * 0.02562 * 9 7 2 11 11 N 1.30314 * 108.12701 * 179.97438 * 10 9 7 12 12 N 1.39867 * 109.35914 * 0.02562 * 11 10 9 13 13 C 1.40172 * 125.68309 * 179.97438 * 12 11 10 14 14 C 1.38825 * 120.07301 * 179.74181 * 13 12 11 15 15 C 1.38126 * 119.95355 * 179.76976 * 14 13 12 16 16 C 1.38304 * 120.11137 * 0.48779 * 15 14 13 17 17 C 1.38251 * 120.16075 * 359.78987 * 16 15 14 18 18 C 1.38331 * 120.04197 * 359.95953 * 17 16 15 19 19 F 1.35092 * 120.05799 * 180.02562 * 18 17 16 20 20 C 1.34876 * 108.62322 * 359.97438 * 12 11 10 21 21 F 1.35107 * 126.46331 * 179.97438 * 20 12 11 22 22 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 23 23 H 1.07999 * 125.94019 * 0.22739 * 10 9 7 24 24 H 1.08002 * 120.02304 * 0.02562 * 14 13 12 25 25 H 1.07995 * 119.94130 * 180.23631 * 15 14 13 26 26 H 1.08002 * 119.91535 * 179.76606 * 16 15 14 27 27 H 1.07997 * 119.98065 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.4923 2.0464 -1.4000 5 1 1.4423 2.6527 0.7001 6 1 3.5424 1.4402 0.7001 7 6 2.0091 -1.2095 -0.0005 8 1 3.0892 -1.2094 -0.0010 9 6 1.3022 -2.4341 -0.0016 10 6 -0.1080 -2.5970 -0.0028 11 7 -0.3687 -3.8738 -0.0041 12 7 0.8315 -4.5920 -0.0033 13 6 0.9484 -5.9889 -0.0038 14 6 2.2036 -6.5819 -0.0083 15 6 2.3160 -7.9586 -0.0039 16 6 1.1800 -8.7475 -0.0053 17 6 -0.0723 -8.1618 -0.0066 18 6 -0.1924 -6.7838 -0.0058 19 9 -1.4160 -6.2112 -0.0065 20 6 1.8574 -3.7165 -0.0020 21 9 3.1736 -4.0217 -0.0004 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8380 -1.8011 -0.0065 24 1 3.0917 -5.9672 -0.0110 25 1 3.2926 -8.4197 -0.0036 26 1 1.2716 -9.8236 -0.0057 27 1 -0.9575 -8.7806 -0.0081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260623209.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:02 Heat of formation + Delta-G solvation = 0.993275 kcal Electronic energy + Delta-G solvation = -17483.599201 eV Core-core repulsion = 14264.752647 eV Total energy + Delta-G solvation = -3218.846553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.74108 -49.57604 -41.69486 -39.68219 -35.95120 -34.02812 -31.63594 -31.06612 -29.98300 -27.07415 -24.17435 -23.99576 -21.80340 -21.66107 -19.84701 -18.40803 -18.27848 -17.27461 -17.17829 -16.99553 -16.41431 -16.17907 -16.00591 -15.35792 -14.85627 -14.78753 -14.74480 -14.01917 -13.58833 -13.35602 -13.11391 -13.00228 -12.94107 -12.80313 -12.15128 -11.80873 -11.57180 -11.18766 -10.95749 -9.91146 -9.69354 -9.03661 -8.67116 -6.30476 -0.20069 0.14371 1.10897 1.42848 1.46814 1.48109 1.58776 2.05482 2.23122 2.64898 3.21065 3.21517 3.49687 3.77412 3.90962 4.18588 4.31336 4.37860 4.67599 4.79305 4.92475 5.06626 5.15626 5.26625 5.33562 5.39417 5.69047 5.84041 6.26252 6.40300 6.64751 6.80903 6.96528 8.33671 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.042886 B = 0.006281 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.740668 B = 4456.992210 C = 5099.889465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.033 3.967 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.076 0.924 9 C -0.027 4.027 10 C 0.050 3.950 11 N -0.301 5.301 12 N -0.352 5.352 13 C 0.112 3.888 14 C -0.162 4.162 15 C -0.084 4.084 16 C -0.106 4.106 17 C -0.120 4.120 18 C 0.042 3.958 19 F -0.141 7.141 20 C 0.006 3.994 21 F -0.116 7.116 22 H 0.295 0.705 23 H 0.219 0.781 24 H 0.134 0.866 25 H 0.173 0.827 26 H 0.184 0.816 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -10.914 -0.020 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.179 4.179 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.094 0.906 9 C -0.037 4.037 10 C -0.139 4.139 11 N -0.120 5.120 12 N -0.136 5.136 13 C 0.016 3.984 14 C -0.183 4.183 15 C -0.103 4.103 16 C -0.125 4.125 17 C -0.139 4.139 18 C 0.020 3.980 19 F -0.120 7.120 20 C -0.127 4.127 21 F -0.096 7.096 22 H 0.106 0.894 23 H 0.235 0.765 24 H 0.151 0.849 25 H 0.190 0.810 26 H 0.201 0.799 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.427 -11.569 -0.018 11.656 hybrid contribution 0.857 1.653 -0.006 1.862 sum 2.283 -9.916 -0.024 10.175 Atomic orbital electron populations 1.69414 1.08592 1.30922 1.38098 1.26729 0.95841 1.04389 0.90990 0.84882 0.78494 0.74884 0.79494 1.18633 1.18619 1.18660 1.19079 0.94522 0.89496 1.45800 0.90579 1.18244 0.92790 0.90781 1.01886 1.25312 0.97327 0.92476 0.98779 1.76985 1.02666 1.06726 1.25619 1.45236 1.03716 1.03132 1.61545 1.18414 0.95999 0.79416 1.04569 1.21351 0.94285 0.97838 1.04839 1.21454 1.01574 0.90379 0.96846 1.21498 0.89735 1.02333 0.98911 1.21441 1.01762 0.89844 1.00861 1.17797 0.78419 0.92421 1.09380 1.91485 1.40591 1.85729 1.94184 1.17575 0.74909 0.89628 1.30600 1.91240 1.29021 1.93074 1.96228 0.89358 0.76527 0.84877 0.80969 0.79898 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.82 10.32 21.79 0.22 -41.60 15 2 C 0.03 1.62 5.49 85.15 0.47 2.09 15 3 Si 1.00 37.51 29.56 68.60 2.03 39.53 15 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 5 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 7 C -0.46 -25.06 9.39 23.39 0.22 -24.84 15 8 H 0.08 4.08 7.84 -2.91 -0.02 4.06 15 9 C -0.03 -1.53 5.94 -21.22 -0.13 -1.66 15 10 C 0.05 2.76 10.91 85.84 0.94 3.70 15 11 N -0.30 -16.41 10.65 -55.89 -0.60 -17.00 15 12 N -0.35 -18.39 3.77 -185.90 -0.70 -19.09 15 13 C 0.11 4.86 6.69 38.14 0.26 5.12 15 14 C -0.16 -5.72 9.42 22.38 0.21 -5.51 15 15 C -0.08 -1.98 10.04 22.26 0.22 -1.76 15 16 C -0.11 -2.11 10.04 22.29 0.22 -1.89 15 17 C -0.12 -3.12 10.02 22.29 0.22 -2.90 15 18 C 0.04 1.61 7.29 22.49 0.16 1.77 15 19 F -0.14 -6.13 15.51 44.97 0.70 -5.44 15 20 C 0.01 0.33 8.53 84.59 0.72 1.05 15 21 F -0.12 -5.80 14.69 44.97 0.66 -5.14 15 22 H 0.30 13.05 8.30 -92.71 -0.77 12.28 15 23 H 0.22 11.73 5.77 -2.91 -0.02 11.71 15 24 H 0.13 5.00 5.41 -2.91 -0.02 4.98 15 25 H 0.17 2.62 8.06 -2.91 -0.02 2.60 15 26 H 0.18 1.82 8.06 -2.91 -0.02 1.79 15 27 H 0.17 3.21 8.06 -2.91 -0.02 3.18 15 Total: -1.00 -66.26 251.08 7.06 -59.20 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.23 Total: 14.36 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 3.52 Total: -24.83 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.07 Total: -77.69 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 1.36 Total: -10.58 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.53 kcal Total: -66.26 7.06 -59.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623209.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.195 kcal (2) G-P(sol) polarization free energy of solvation -66.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds