Wall clock time and date at job start Mon Mar 30 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30217 * 126.15961 * 2 1 4 4 N 1.39812 * 110.15919 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.38887 * 180.02562 * 4 3 2 6 6 C 1.36789 * 109.22440 * 0.02562 * 4 3 2 7 7 C 1.41109 * 106.67022 * 359.97438 * 6 4 3 8 8 C 1.39359 * 119.91692 * 179.97438 * 7 6 4 9 9 C 1.40278 * 119.32684 * 0.02562 * 8 7 6 10 10 C 1.41335 * 120.02714 * 179.97438 * 9 8 7 11 11 H 1.07990 * 119.99862 * 154.42233 * 10 9 8 12 12 C 1.39866 * 119.99932 * 334.42987 * 10 9 8 13 13 N 1.30893 * 120.00043 * 343.14491 * 12 10 9 14 14 Si 1.86800 * 120.00017 * 163.14796 * 12 10 9 15 15 H 1.48499 * 109.46889 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47009 * 119.99911 * 14 12 10 17 17 H 1.48498 * 109.46768 * 239.99641 * 14 12 10 18 18 C 1.41177 * 119.94530 * 359.97438 * 9 8 7 19 19 C 1.35980 * 120.57078 * 359.77309 * 18 9 8 20 20 Cl 1.73602 * 119.83606 * 180.02562 * 19 18 9 21 21 H 1.08998 * 109.47069 * 270.02260 * 1 2 3 22 22 H 1.09007 * 109.47492 * 30.02576 * 1 2 3 23 23 H 1.09001 * 109.47290 * 150.02243 * 1 2 3 24 24 H 1.08994 * 109.47330 * 269.94507 * 5 4 3 25 25 H 1.08996 * 109.47043 * 29.95011 * 5 4 3 26 26 H 1.09004 * 109.46690 * 149.94586 * 5 4 3 27 27 H 1.07996 * 120.33631 * 179.97438 * 8 7 6 28 28 H 0.96997 * 119.99929 * 180.02562 * 13 12 10 29 29 H 1.08002 * 119.71560 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0513 0.0000 4 7 3.6192 0.6660 0.0006 5 6 4.7640 1.5802 0.0013 6 6 3.6962 -0.6998 0.0004 7 6 2.3693 -1.1799 0.0003 8 6 2.1267 -2.5523 -0.0005 9 6 3.2115 -3.4417 -0.0005 10 6 2.9825 -4.8364 -0.0007 11 1 3.7275 -5.5058 -0.4046 12 6 1.7910 -5.3495 0.5219 13 7 1.0428 -4.6063 1.2973 14 14 1.2675 -7.0956 0.1136 15 1 2.2792 -7.7204 -0.7759 16 1 1.1548 -7.8844 1.3668 17 1 -0.0479 -7.0696 -0.5749 18 6 4.5321 -2.9426 -0.0004 19 6 4.7651 -1.6029 -0.0049 20 17 6.3967 -1.0100 -0.0053 21 1 -0.3633 0.0004 1.0276 22 1 -0.3634 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5135 24 1 5.0490 1.8063 -1.0261 25 1 4.4920 2.5026 0.5144 26 1 5.6027 1.1117 0.5163 27 1 1.1139 -2.9272 -0.0001 28 1 0.2167 -4.9623 1.6600 29 1 5.3645 -3.6307 -0.0009 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260673664.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:09 Heat of formation + Delta-G solvation = 65.291020 kcal Electronic energy + Delta-G solvation = -15714.217970 eV Core-core repulsion = 13049.956257 eV Total energy + Delta-G solvation = -2664.261713 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14002 -36.56815 -35.69123 -33.31474 -33.13430 -29.44279 -28.88685 -28.79219 -25.83840 -23.87303 -21.78457 -20.77918 -18.81379 -17.47678 -16.02446 -15.65591 -14.85573 -14.81096 -14.12902 -13.60503 -13.18882 -13.01767 -12.79466 -12.35846 -12.16920 -11.94368 -11.79818 -11.43999 -11.38929 -11.19793 -10.76419 -10.42472 -10.09165 -10.00944 -9.86698 -9.62131 -9.17116 -8.66411 -7.61595 -6.84257 -6.78717 -4.34688 1.99365 2.62507 2.94927 3.06481 3.07574 3.12583 3.24549 3.35630 3.91456 4.46358 5.15543 5.37680 5.42146 5.64206 5.68859 5.77970 5.89434 6.08496 6.23787 6.32008 6.47063 6.65468 6.84815 7.03838 7.10743 7.18935 7.58224 7.75912 7.89677 8.00476 8.37950 8.56783 8.73097 8.78177 10.16217 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.008253 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.357297 B = 3391.854034 C = 4500.701384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.075 3.925 3 N -0.271 5.271 4 N -0.417 5.417 5 C 0.117 3.883 6 C 0.041 3.959 7 C -0.125 4.125 8 C -0.106 4.106 9 C 0.084 3.916 10 C -0.459 4.459 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.798 5.798 14 Si 0.908 3.092 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.134 4.134 19 C -0.033 4.033 20 Cl -0.118 7.118 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.281 0.719 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 4.401 -1.609 4.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 N -0.086 5.086 4 N -0.210 5.210 5 C -0.026 4.026 6 C -0.070 4.070 7 C -0.132 4.132 8 C -0.129 4.129 9 C 0.080 3.920 10 C -0.490 4.490 11 H 0.098 0.902 12 C -0.142 4.142 13 N -0.424 5.424 14 Si 0.733 3.267 15 H -0.184 1.184 16 H -0.201 1.201 17 H -0.197 1.197 18 C -0.156 4.156 19 C -0.063 4.063 20 Cl -0.089 7.089 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.150 0.850 28 H 0.092 0.908 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.421 5.803 -1.464 6.151 hybrid contribution 0.119 -1.475 -0.019 1.480 sum 1.540 4.328 -1.483 4.827 Atomic orbital electron populations 1.20062 0.86724 1.02676 1.02638 1.23326 0.95932 0.89496 1.01503 1.76142 0.87769 1.24196 1.20510 1.47354 1.02791 1.02479 1.68342 1.21676 0.86069 0.93097 1.01735 1.18000 0.94295 0.83622 1.11054 1.19635 0.89816 0.94399 1.09334 1.20925 1.00296 0.88012 1.03654 1.17293 0.88872 0.93896 0.91907 1.19400 1.02270 0.91543 1.35749 0.90178 1.25823 0.95782 0.99958 0.92601 1.69821 1.12138 1.38045 1.22415 0.86257 0.79381 0.81889 0.79203 1.18442 1.20069 1.19710 1.20762 0.98058 0.91059 1.05697 1.19224 0.80404 0.92452 1.14244 1.98244 1.24029 1.88924 1.97736 0.90799 0.91557 0.90366 0.92814 0.91079 0.89855 0.85022 0.90840 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.48 36.00 0.38 -0.63 15 2 C 0.08 1.58 7.44 -80.11 -0.60 0.99 15 3 N -0.27 -5.78 12.39 34.88 0.43 -5.35 15 4 N -0.42 -8.83 4.04 -65.27 -0.26 -9.09 15 5 C 0.12 1.92 10.82 59.85 0.65 2.57 15 6 C 0.04 0.94 6.84 -83.93 -0.57 0.37 15 7 C -0.12 -2.97 6.31 -105.22 -0.66 -3.63 15 8 C -0.11 -2.64 8.74 -38.40 -0.34 -2.98 15 9 C 0.08 2.11 5.57 -106.84 -0.59 1.52 15 10 C -0.46 -11.45 9.04 -37.80 -0.34 -11.79 15 11 H 0.08 1.91 7.90 -52.49 -0.41 1.50 15 12 C 0.08 1.79 5.14 -17.34 -0.09 1.70 15 13 N -0.80 -19.57 10.96 55.54 0.61 -18.96 15 14 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 15 15 H -0.26 -5.09 7.11 56.52 0.40 -4.68 15 16 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 18 C -0.13 -3.11 9.44 -39.28 -0.37 -3.48 15 19 C -0.03 -0.74 6.29 -39.76 -0.25 -0.99 15 20 Cl -0.12 -2.16 26.01 -51.86 -1.35 -3.51 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.07 0.93 8.14 -51.92 -0.42 0.50 15 23 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.08 1.33 5.72 -51.93 -0.30 1.03 15 27 H 0.13 3.31 6.19 -52.49 -0.32 2.98 15 28 H 0.28 6.25 8.30 -40.82 -0.34 5.92 15 29 H 0.12 2.49 8.06 -52.49 -0.42 2.07 15 LS Contribution 267.32 15.07 4.03 4.03 Total: -1.00 -27.42 267.32 -7.07 -34.50 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.71 Total: 1.95 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.79 Total: -16.37 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.78 Total: -33.40 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.35 Total: -3.51 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.42 -7.07 -34.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260673664.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.787 kcal (2) G-P(sol) polarization free energy of solvation -27.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds