Wall clock time and date at job start Mon Mar 30 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30217 * 126.15961 * 2 1 4 4 N 1.39812 * 110.15919 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.38887 * 180.02562 * 4 3 2 6 6 C 1.36789 * 109.22440 * 0.02562 * 4 3 2 7 7 C 1.41109 * 106.67022 * 359.97438 * 6 4 3 8 8 C 1.39359 * 119.91692 * 179.97438 * 7 6 4 9 9 C 1.40278 * 119.32684 * 0.02562 * 8 7 6 10 10 C 1.41335 * 120.02714 * 179.97438 * 9 8 7 11 11 H 1.07990 * 119.99862 * 154.42233 * 10 9 8 12 12 C 1.39866 * 119.99932 * 334.42987 * 10 9 8 13 13 N 1.30893 * 120.00043 * 343.14491 * 12 10 9 14 14 Si 1.86800 * 120.00017 * 163.14796 * 12 10 9 15 15 H 1.48499 * 109.46889 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47009 * 119.99911 * 14 12 10 17 17 H 1.48498 * 109.46768 * 239.99641 * 14 12 10 18 18 C 1.41177 * 119.94530 * 359.97438 * 9 8 7 19 19 C 1.35980 * 120.57078 * 359.77309 * 18 9 8 20 20 Cl 1.73602 * 119.83606 * 180.02562 * 19 18 9 21 21 H 1.08998 * 109.47069 * 270.02260 * 1 2 3 22 22 H 1.09007 * 109.47492 * 30.02576 * 1 2 3 23 23 H 1.09001 * 109.47290 * 150.02243 * 1 2 3 24 24 H 1.08994 * 109.47330 * 269.94507 * 5 4 3 25 25 H 1.08996 * 109.47043 * 29.95011 * 5 4 3 26 26 H 1.09004 * 109.46690 * 149.94586 * 5 4 3 27 27 H 1.07996 * 120.33631 * 179.97438 * 8 7 6 28 28 H 0.96997 * 119.99929 * 180.02562 * 13 12 10 29 29 H 1.08002 * 119.71560 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0513 0.0000 4 7 3.6192 0.6660 0.0006 5 6 4.7640 1.5802 0.0013 6 6 3.6962 -0.6998 0.0004 7 6 2.3693 -1.1799 0.0003 8 6 2.1267 -2.5523 -0.0005 9 6 3.2115 -3.4417 -0.0005 10 6 2.9825 -4.8364 -0.0007 11 1 3.7275 -5.5058 -0.4046 12 6 1.7910 -5.3495 0.5219 13 7 1.0428 -4.6063 1.2973 14 14 1.2675 -7.0956 0.1136 15 1 2.2792 -7.7204 -0.7759 16 1 1.1548 -7.8844 1.3668 17 1 -0.0479 -7.0696 -0.5749 18 6 4.5321 -2.9426 -0.0004 19 6 4.7651 -1.6029 -0.0049 20 17 6.3967 -1.0100 -0.0053 21 1 -0.3633 0.0004 1.0276 22 1 -0.3634 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5135 24 1 5.0490 1.8063 -1.0261 25 1 4.4920 2.5026 0.5144 26 1 5.6027 1.1117 0.5163 27 1 1.1139 -2.9272 -0.0001 28 1 0.2167 -4.9623 1.6600 29 1 5.3645 -3.6307 -0.0009 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260673664.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:09 Heat of formation + Delta-G solvation = 50.992059 kcal Electronic energy + Delta-G solvation = -15714.838020 eV Core-core repulsion = 13049.956257 eV Total energy + Delta-G solvation = -2664.881763 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.81874 -38.28793 -37.34864 -35.05748 -34.70047 -31.18730 -30.62011 -30.21145 -27.54214 -25.45167 -23.54554 -22.53102 -20.45078 -19.25429 -17.67765 -17.39754 -16.48472 -16.40013 -15.88002 -15.24798 -14.83740 -14.34343 -14.23105 -13.94588 -13.72835 -13.53473 -13.21607 -13.13063 -12.83998 -12.77553 -12.45862 -12.06057 -11.83660 -11.67410 -11.46533 -11.31959 -10.91035 -10.33520 -9.40117 -8.60184 -8.52918 -6.20617 0.23969 0.86178 1.26156 1.46203 1.49828 1.60221 1.67571 1.70639 2.27641 2.67714 3.56588 3.67848 3.79464 4.12252 4.39800 4.42743 4.57015 4.62661 4.83048 4.85778 4.90073 4.98619 5.20892 5.29627 5.34711 5.38452 5.88480 5.93311 6.07288 6.34708 6.54887 6.86593 6.91593 6.94627 8.41393 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.008253 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.357297 B = 3391.854034 C = 4500.701384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.069 3.931 3 N -0.276 5.276 4 N -0.421 5.421 5 C 0.108 3.892 6 C 0.028 3.972 7 C -0.150 4.150 8 C -0.123 4.123 9 C 0.057 3.943 10 C -0.490 4.490 11 H 0.081 0.919 12 C 0.038 3.962 13 N -0.828 5.828 14 Si 0.979 3.021 15 H -0.259 1.259 16 H -0.270 1.270 17 H -0.265 1.265 18 C -0.143 4.143 19 C -0.036 4.036 20 Cl -0.082 7.082 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.288 0.712 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 4.842 -1.801 5.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.108 4.108 3 N -0.091 5.091 4 N -0.214 5.214 5 C -0.033 4.033 6 C -0.083 4.083 7 C -0.157 4.157 8 C -0.145 4.145 9 C 0.053 3.947 10 C -0.520 4.520 11 H 0.099 0.901 12 C -0.176 4.176 13 N -0.454 5.454 14 Si 0.800 3.200 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.190 1.190 18 C -0.165 4.165 19 C -0.066 4.066 20 Cl -0.054 7.054 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.099 0.901 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.543 6.280 -1.657 6.676 hybrid contribution 0.199 -1.470 0.055 1.484 sum 1.741 4.810 -1.602 5.360 Atomic orbital electron populations 1.20204 0.83742 1.04034 1.03837 1.23962 0.97843 0.88254 1.00746 1.76119 0.88007 1.24220 1.20754 1.47753 1.03700 1.02272 1.67653 1.21984 0.84851 0.93214 1.03210 1.18249 0.94427 0.84889 1.10782 1.20003 0.91248 0.94793 1.09630 1.20831 0.99744 0.88734 1.05212 1.17625 0.89896 0.94472 0.92671 1.19645 1.03485 0.91772 1.37089 0.90125 1.26604 0.95261 1.03879 0.91865 1.69871 1.12666 1.39941 1.22954 0.85195 0.78964 0.76822 0.78973 1.18248 1.19514 1.19016 1.20901 0.97800 0.91906 1.05875 1.19274 0.82247 0.92130 1.12961 1.98243 1.21090 1.88480 1.97550 0.89555 0.89002 0.90154 0.91190 0.88844 0.89450 0.86182 0.90112 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.86 10.48 71.23 0.75 -1.11 15 2 C 0.07 2.88 7.44 44.85 0.33 3.21 15 3 N -0.28 -11.38 12.39 -43.56 -0.54 -11.92 15 4 N -0.42 -17.24 4.04 -360.40 -1.46 -18.70 15 5 C 0.11 3.30 10.82 127.77 1.38 4.68 15 6 C 0.03 1.29 6.84 39.49 0.27 1.56 15 7 C -0.15 -7.17 6.31 -20.25 -0.13 -7.29 15 8 C -0.12 -6.26 8.74 23.04 0.20 -6.06 15 9 C 0.06 2.93 5.57 -21.30 -0.12 2.82 15 10 C -0.49 -24.95 9.04 23.43 0.21 -24.74 15 11 H 0.08 3.93 7.90 -2.92 -0.02 3.91 15 12 C 0.04 1.83 5.14 85.23 0.44 2.27 15 13 N -0.83 -41.23 10.96 21.81 0.24 -40.99 15 14 Si 0.98 36.53 29.59 68.60 2.03 38.56 15 15 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 15 17 H -0.27 -9.54 7.11 99.48 0.71 -8.84 15 18 C -0.14 -6.72 9.44 22.47 0.21 -6.51 15 19 C -0.04 -1.58 6.29 22.16 0.14 -1.44 15 20 Cl -0.08 -2.88 26.01 -2.72 -0.07 -2.95 15 21 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.09 2.36 8.14 -2.38 -0.02 2.34 15 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.09 2.58 5.72 -2.38 -0.01 2.56 15 27 H 0.12 6.27 6.19 -2.91 -0.02 6.25 15 28 H 0.29 12.95 8.30 -92.71 -0.77 12.18 15 29 H 0.13 5.46 8.06 -2.91 -0.02 5.44 15 Total: -1.00 -58.50 267.32 5.07 -53.43 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 1.18 Total: 15.19 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 3.69 Total: -32.61 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.76 Total: -71.61 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.07 Total: -2.95 kcal Total: -58.50 5.07 -53.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260673664.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.420 kcal (2) G-P(sol) polarization free energy of solvation -58.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds