Wall clock time and date at job start Mon Mar 30 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75305 * 124.29277 * 2 1 4 4 C 1.75907 * 92.19361 * 179.97438 * 3 2 1 5 5 C 1.39857 * 130.54010 * 179.97438 * 4 3 2 6 6 C 1.37670 * 120.15794 * 179.16200 * 5 4 3 7 7 F 1.35096 * 119.93382 * 180.24226 * 6 5 4 8 8 C 1.39046 * 120.13221 * 0.75886 * 6 5 4 9 9 C 1.36078 * 120.56588 * 359.52224 * 8 6 5 10 10 C 1.39729 * 109.68209 * 359.72542 * 4 3 2 11 11 C 1.31787 * 124.30161 * 179.97438 * 2 1 3 12 12 C 1.50706 * 122.54723 * 0.03839 * 11 2 1 13 13 C 1.50702 * 109.46975 * 90.02717 * 12 11 2 14 14 H 1.07998 * 120.00221 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99982 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99617 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99935 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47477 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47233 * 120.00050 * 17 15 13 20 20 H 1.48506 * 109.46908 * 239.99801 * 17 15 13 21 21 H 1.09006 * 109.47096 * 270.04069 * 1 2 3 22 22 H 1.08992 * 109.47528 * 30.04015 * 1 2 3 23 23 H 1.08997 * 109.46982 * 150.04288 * 1 2 3 24 24 H 1.08001 * 119.91758 * 359.97438 * 5 4 3 25 25 H 1.07999 * 119.72283 * 179.50258 * 8 6 5 26 26 H 1.07996 * 119.75855 * 179.97438 * 9 8 6 27 27 H 1.08994 * 109.46790 * 210.02117 * 12 11 2 28 28 H 1.08997 * 109.47305 * 330.02558 * 12 11 2 29 29 H 0.96998 * 119.99644 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4947 1.4483 0.0000 4 6 3.9849 0.5136 0.0008 5 6 5.3197 0.9309 0.0007 6 6 6.3350 0.0013 0.0188 7 9 7.6228 0.4095 0.0236 8 6 6.0377 -1.3570 0.0214 9 6 4.7452 -1.7826 0.0158 10 6 3.6844 -0.8510 0.0073 11 6 2.2497 -1.0887 0.0005 12 6 1.6572 -2.4744 0.0003 13 6 1.4611 -2.9366 -1.4207 14 1 1.7374 -2.2914 -2.2414 15 6 0.9289 -4.1833 -1.6729 16 7 0.5928 -4.9692 -0.6733 17 14 0.6852 -4.7559 -3.4341 18 1 1.1386 -3.6935 -4.3673 19 1 1.4764 -5.9908 -3.6671 20 1 -0.7538 -5.0385 -3.6680 21 1 -0.3633 0.0007 1.0277 22 1 -0.3634 0.8895 -0.5144 23 1 -0.3633 -0.8904 -0.5132 24 1 5.5545 1.9851 -0.0004 25 1 6.8394 -2.0806 0.0275 26 1 4.5292 -2.8407 0.0175 27 1 2.3322 -3.1582 0.5148 28 1 0.6955 -2.4585 0.5131 29 1 0.2188 -5.8464 -0.8507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260701875.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:34 Heat of formation + Delta-G solvation = -34.318496 kcal Electronic energy + Delta-G solvation = -15323.932156 eV Core-core repulsion = 12637.474795 eV Total energy + Delta-G solvation = -2686.457361 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.94688 -40.54592 -37.32736 -34.80263 -32.36722 -31.73162 -30.41392 -27.34477 -25.54150 -23.82136 -23.07634 -19.98448 -19.23147 -18.47657 -17.61317 -17.25090 -16.65317 -16.62846 -16.20165 -15.11034 -15.01636 -14.83538 -14.25736 -14.20920 -13.77891 -13.69567 -13.63017 -13.03105 -12.97121 -12.67612 -12.37231 -12.32151 -11.76493 -11.68545 -11.37707 -11.31810 -10.58642 -10.50638 -9.26455 -8.60411 -8.15543 -6.30179 -0.34987 0.09018 0.54317 0.99704 1.28887 1.39112 1.42533 1.53664 2.40466 2.58101 3.12917 3.21162 3.62143 3.76454 3.97067 4.17005 4.34991 4.51771 4.58605 4.77292 4.78649 4.90701 5.02044 5.13324 5.18750 5.28037 5.34689 5.52340 5.73932 5.78293 5.89542 6.19216 6.80746 7.37976 8.90532 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.007441 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.560067 B = 3762.197767 C = 4628.463192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.185 4.185 3 S 0.108 5.892 4 C -0.134 4.134 5 C -0.120 4.120 6 C 0.105 3.895 7 F -0.134 7.134 8 C -0.148 4.148 9 C -0.053 4.053 10 C -0.089 4.089 11 C -0.078 4.078 12 C 0.082 3.918 13 C -0.518 4.518 14 H 0.048 0.952 15 C 0.014 3.986 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.161 0.839 25 H 0.163 0.837 26 H 0.131 0.869 27 H 0.006 0.994 28 H 0.015 0.985 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 11.015 1.568 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.300 4.300 3 S 0.373 5.627 4 C -0.250 4.250 5 C -0.144 4.144 6 C 0.083 3.917 7 F -0.113 7.113 8 C -0.169 4.169 9 C -0.073 4.073 10 C -0.097 4.097 11 C -0.088 4.088 12 C 0.043 3.957 13 C -0.556 4.556 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.566 5.566 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.202 1.202 21 H 0.100 0.900 22 H 0.103 0.897 23 H 0.085 0.915 24 H 0.178 0.822 25 H 0.181 0.819 26 H 0.149 0.851 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.316 12.432 1.608 14.037 hybrid contribution 0.245 -2.190 -0.742 2.325 sum 6.561 10.242 0.866 12.194 Atomic orbital electron populations 1.20365 0.86787 1.03346 1.03088 1.23836 1.01080 0.95006 1.10046 1.83305 0.92427 1.06764 1.80241 1.22566 0.98271 0.96475 1.07651 1.20443 0.88594 1.00876 1.04441 1.17347 0.78187 0.92750 1.03368 1.91494 1.34654 1.91156 1.93987 1.20837 0.97478 0.94641 1.03908 1.20767 0.90898 0.99779 0.95827 1.19467 0.93564 0.92953 1.03744 1.20191 0.91115 0.97760 0.99691 1.17776 0.94627 0.86903 0.96389 1.21240 1.41541 1.00682 0.92155 0.93376 1.25746 0.95088 0.96669 1.01014 1.70062 1.43821 1.10040 1.32629 0.85528 0.77994 0.78241 0.80104 1.19364 1.20332 1.20226 0.90011 0.89719 0.91518 0.82169 0.81914 0.85094 0.97599 0.96668 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.58 9.65 71.24 0.69 -1.89 15 2 C -0.19 -6.99 6.38 24.93 0.16 -6.83 15 3 S 0.11 3.32 23.20 -56.49 -1.31 2.01 15 4 C -0.13 -4.51 6.48 23.02 0.15 -4.37 15 5 C -0.12 -3.39 10.05 22.53 0.23 -3.17 15 6 C 0.11 2.95 7.29 22.33 0.16 3.12 15 7 F -0.13 -3.49 17.26 44.97 0.78 -2.72 15 8 C -0.15 -4.27 9.93 21.96 0.22 -4.06 15 9 C -0.05 -1.89 9.73 22.49 0.22 -1.68 15 10 C -0.09 -3.48 6.01 -20.34 -0.12 -3.60 15 11 C -0.08 -3.38 5.16 -18.77 -0.10 -3.48 15 12 C 0.08 4.21 4.53 29.10 0.13 4.34 15 13 C -0.52 -28.41 9.06 25.60 0.23 -28.18 15 14 H 0.05 2.67 7.74 -2.91 -0.02 2.65 15 15 C 0.01 0.74 5.46 84.66 0.46 1.21 15 16 N -0.93 -53.56 13.29 21.45 0.28 -53.28 15 17 Si 0.96 43.21 29.54 68.60 2.03 45.24 15 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 21 H 0.08 2.44 8.14 -2.38 -0.02 2.42 15 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.07 2.61 7.15 -2.39 -0.02 2.59 15 24 H 0.16 3.56 8.06 -2.91 -0.02 3.54 15 25 H 0.16 3.72 8.06 -2.91 -0.02 3.69 15 26 H 0.13 4.88 7.63 -2.91 -0.02 4.86 15 27 H 0.01 0.31 7.58 -2.39 -0.02 0.30 15 28 H 0.02 0.81 7.14 -2.39 -0.02 0.80 15 29 H 0.27 14.43 8.31 -92.71 -0.77 13.66 15 Total: -1.00 -60.12 272.28 5.37 -54.75 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.17 Total: 2.58 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 2.43 Total: -48.58 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.28 Total: -53.28 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.31 Total: 2.01 kcal Total: -60.12 5.37 -54.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260701875.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.431 kcal (2) G-P(sol) polarization free energy of solvation -60.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds