Wall clock time and date at job start Mon Mar 30 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33274 * 125.13882 * 2 1 4 4 C 1.38544 * 114.96973 * 179.71192 * 3 2 1 5 5 C 1.33966 * 114.75842 * 0.49833 * 4 3 2 6 6 O 1.35838 * 125.23052 * 179.78947 * 5 4 3 7 7 C 1.36126 * 117.99885 * 173.45175 * 6 5 4 8 8 C 1.40552 * 126.06519 * 350.43329 * 7 6 5 9 9 N 1.30928 * 108.40212 * 180.26261 * 8 7 6 10 10 N 1.40085 * 108.36949 * 359.59184 * 9 8 7 11 11 C 1.37330 * 126.08137 * 180.16434 * 10 9 8 12 12 H 1.08004 * 119.99706 * 180.28599 * 11 10 9 13 13 C 1.38966 * 119.99854 * 0.29719 * 11 10 9 14 14 N 1.31301 * 120.00638 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47186 * 59.99209 * 15 13 11 17 17 H 1.48496 * 109.47208 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47143 * 299.99761 * 15 13 11 19 19 C 1.35571 * 126.06005 * 170.43952 * 7 6 5 20 20 S 1.75859 * 125.14534 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47345 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.47133 * 299.99647 * 1 2 3 23 23 H 1.09000 * 109.47735 * 59.99516 * 1 2 3 24 24 H 1.08005 * 122.51883 * 359.97438 * 3 2 1 25 25 H 1.07998 * 122.62157 * 180.29221 * 4 3 2 26 26 H 1.08003 * 125.80044 * 0.02562 * 8 7 6 27 27 H 0.96995 * 120.00867 * 180.02562 * 14 13 11 28 28 H 1.08000 * 126.24078 * 359.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2740 1.0899 0.0000 4 6 3.6377 0.8453 0.0063 5 6 3.9752 -0.4512 0.0009 6 8 5.2464 -0.9300 0.0013 7 6 5.4232 -2.2733 0.1323 8 6 4.4279 -3.2112 0.4567 9 7 4.9767 -4.3992 0.4968 10 7 6.3375 -4.2674 0.1913 11 6 7.2547 -5.2876 0.1280 12 1 8.2853 -5.0729 -0.1133 13 6 6.8567 -6.5960 0.3743 14 7 5.6038 -6.8570 0.6680 15 14 8.1041 -7.9837 0.2875 16 1 9.1818 -7.7435 1.2806 17 1 7.4320 -9.2731 0.5891 18 1 8.6905 -8.0377 -1.0757 19 6 6.5907 -2.9438 -0.0267 20 16 2.5193 -1.4380 0.0006 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8634 2.0888 -0.0004 25 1 4.3713 1.6378 0.0117 26 1 3.3878 -2.9891 0.6450 27 1 5.3260 -7.7702 0.8402 28 1 7.5467 -2.5100 -0.2802 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260785320.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:54 Heat of formation + Delta-G solvation = 91.070855 kcal Electronic energy + Delta-G solvation = -15229.668708 eV Core-core repulsion = 12568.568599 eV Total energy + Delta-G solvation = -2661.100109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11392 -38.41908 -36.75365 -33.61392 -31.26802 -30.59111 -28.35231 -25.80437 -25.12808 -22.75341 -21.36654 -20.52749 -19.00055 -17.93059 -16.74266 -15.73432 -15.48186 -15.05298 -14.85363 -14.18624 -13.90348 -13.62993 -13.36137 -13.05751 -12.80213 -11.97792 -11.82211 -11.68855 -11.37697 -11.19306 -11.15150 -10.99659 -10.64725 -9.89802 -9.55262 -9.11114 -8.43797 -8.10164 -8.06779 -6.88544 -6.73578 -4.44858 1.43720 1.73712 2.30611 2.86317 2.96670 3.01620 3.06054 3.39099 3.51392 3.82935 3.91553 4.58069 4.84725 5.18725 5.44978 5.65320 5.69397 5.82740 5.92863 6.06746 6.23560 6.35312 6.52214 6.56958 6.76778 6.85261 7.03639 7.30029 7.74941 8.21107 8.46292 9.10014 9.31963 10.22368 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.054585 B = 0.005188 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.840493 B = 5395.792862 C = 5877.829157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.250 4.250 3 C -0.106 4.106 4 C -0.214 4.214 5 C 0.050 3.950 6 O -0.191 6.191 7 C -0.110 4.110 8 C -0.089 4.089 9 N -0.237 5.237 10 N -0.131 5.131 11 C -0.318 4.318 12 H 0.123 0.877 13 C 0.046 3.954 14 N -0.767 5.767 15 Si 0.940 3.060 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.265 1.265 19 C -0.058 4.058 20 S 0.115 5.885 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.132 0.868 25 H 0.140 0.860 26 H 0.165 0.835 27 H 0.279 0.721 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 7.747 -1.095 9.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.366 4.366 3 C -0.135 4.135 4 C -0.244 4.244 5 C -0.112 4.112 6 O -0.098 6.098 7 C -0.167 4.167 8 C -0.264 4.264 9 N -0.070 5.070 10 N 0.100 4.900 11 C -0.450 4.450 12 H 0.140 0.860 13 C -0.172 4.172 14 N -0.393 5.393 15 Si 0.763 3.237 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.189 1.189 19 C -0.206 4.206 20 S 0.375 5.625 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.150 0.850 25 H 0.157 0.843 26 H 0.181 0.819 27 H 0.090 0.910 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.953 4.985 -0.866 7.080 hybrid contribution 0.861 1.767 -0.142 1.971 sum -4.092 6.752 -1.008 7.959 Atomic orbital electron populations 1.20158 0.88594 1.02235 1.01954 1.24776 1.00100 0.98103 1.13617 1.19544 0.91634 0.98724 1.03624 1.19448 0.96530 0.93641 1.14745 1.23647 0.86925 0.95814 1.04861 1.83983 1.19977 1.21259 1.84579 1.18467 0.95931 0.80244 1.22017 1.23817 0.98277 0.92003 1.12340 1.78253 0.88139 1.17233 1.23387 1.44613 1.05989 1.03133 1.36266 1.19985 0.90591 0.84633 1.49834 0.85986 1.25699 0.97225 0.99136 0.95150 1.70178 1.15241 1.21621 1.32270 0.85799 0.79504 0.78725 0.79655 1.18938 1.19977 1.18931 1.20925 0.97773 0.84711 1.17171 1.85216 0.95453 1.06612 1.75187 0.91945 0.91420 0.91437 0.85004 0.84261 0.81881 0.91036 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.37 36.00 0.37 -0.44 15 2 C -0.25 -3.77 6.50 -36.04 -0.23 -4.01 15 3 C -0.11 -1.56 10.04 -41.20 -0.41 -1.97 15 4 C -0.21 -3.60 10.22 -40.97 -0.42 -4.02 15 5 C 0.05 0.99 7.19 29.23 0.21 1.20 15 6 O -0.19 -4.24 10.22 -4.14 -0.04 -4.28 15 7 C -0.11 -2.68 6.91 -39.66 -0.27 -2.96 15 8 C -0.09 -2.23 10.36 -17.06 -0.18 -2.40 15 9 N -0.24 -6.64 10.40 30.78 0.32 -6.32 15 10 N -0.13 -3.52 3.74 -11.43 -0.04 -3.57 15 11 C -0.32 -8.13 10.25 -14.82 -0.15 -8.28 15 12 H 0.12 2.76 7.83 -52.48 -0.41 2.35 15 13 C 0.05 1.14 5.50 -17.51 -0.10 1.04 15 14 N -0.77 -20.48 11.81 55.49 0.66 -19.83 15 15 Si 0.94 18.13 29.55 -169.99 -5.02 13.10 15 16 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 17 H -0.28 -5.25 7.11 56.52 0.40 -4.84 15 18 H -0.26 -4.97 7.11 56.52 0.40 -4.56 15 19 C -0.06 -1.40 11.49 -16.42 -0.19 -1.59 15 20 S 0.11 2.08 18.23 -107.50 -1.96 0.12 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.07 0.67 8.14 -51.92 -0.42 0.25 15 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.13 1.55 8.06 -52.48 -0.42 1.13 15 25 H 0.14 2.08 8.06 -52.49 -0.42 1.65 15 26 H 0.17 3.73 4.13 -21.19 -0.09 3.64 15 27 H 0.28 6.79 8.31 -40.82 -0.34 6.45 15 28 H 0.16 3.31 8.06 -52.49 -0.42 2.88 15 LS Contribution 262.98 15.07 3.96 3.96 Total: -1.00 -29.67 262.98 -5.67 -35.34 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -2.17 Total: 4.89 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -1.37 Total: -23.42 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.93 Total: -29.72 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.04 Total: -4.28 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.96 Total: 0.12 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.67 -5.67 -35.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260785320.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.409 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds