Wall clock time and date at job start Mon Mar 30 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99920 * 2 1 4 4 H 1.48501 * 109.47411 * 270.00777 * 3 2 1 5 5 H 1.48501 * 109.47092 * 30.00443 * 3 2 1 6 6 H 1.48496 * 109.47430 * 150.00437 * 3 2 1 7 7 C 1.37879 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47148 * 180.02562 * 10 9 7 12 12 N 1.30230 * 126.10283 * 269.95672 * 11 10 9 13 13 N 1.39874 * 110.08713 * 180.02562 * 12 11 10 14 14 H 0.97003 * 125.46444 * 179.97438 * 13 12 11 15 15 C 1.37044 * 109.07292 * 359.97438 * 13 12 11 16 16 C 1.39288 * 133.80610 * 179.97438 * 15 13 12 17 17 C 1.37688 * 119.72969 * 180.02562 * 16 15 13 18 18 Cl 1.73601 * 119.68056 * 179.97438 * 17 16 15 19 19 C 1.39098 * 120.63764 * 359.95917 * 17 16 15 20 20 C 1.36415 * 120.62457 * 0.02562 * 19 17 16 21 21 C 1.39931 * 119.79459 * 359.97438 * 20 19 17 22 22 H 0.96998 * 120.00307 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47206 * 60.00547 * 9 7 2 24 24 H 1.08995 * 109.47209 * 300.00183 * 9 7 2 25 25 H 1.09000 * 109.46861 * 60.00041 * 10 9 7 26 26 H 1.09004 * 109.46697 * 300.00100 * 10 9 7 27 27 H 1.07999 * 120.13438 * 0.02562 * 16 15 13 28 28 H 1.08001 * 119.68678 * 180.29710 * 19 17 16 29 29 H 1.08001 * 120.10021 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 7 1.1086 -5.6324 1.0507 13 7 0.4368 -6.7968 0.6642 14 1 0.0579 -7.4547 1.2680 15 6 0.3997 -6.8591 -0.7043 16 6 -0.1275 -7.7727 -1.6139 17 6 0.0037 -7.5439 -2.9653 18 17 -0.6533 -8.6838 -4.0979 19 6 0.6572 -6.4081 -3.4318 20 6 1.1808 -5.4999 -2.5589 21 6 1.0602 -5.7105 -1.1808 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8720 -3.6042 -0.8906 27 1 -0.6371 -8.6570 -1.2607 28 1 0.7471 -6.2415 -4.4951 29 1 1.6862 -4.6207 -2.9304 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260787340.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:11 Heat of formation + Delta-G solvation = 40.099862 kcal Electronic energy + Delta-G solvation = -15027.893237 eV Core-core repulsion = 12362.539153 eV Total energy + Delta-G solvation = -2665.354084 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.31881 -38.63936 -37.08463 -36.11651 -34.27405 -32.15843 -30.68816 -30.33844 -27.30788 -24.21298 -23.61656 -23.24470 -20.65307 -19.02066 -18.42245 -17.97998 -16.77053 -16.52912 -15.93814 -15.74259 -15.10334 -14.82169 -14.54768 -14.17767 -13.94012 -13.45009 -13.15168 -12.84184 -12.58524 -12.40279 -12.17927 -12.08827 -11.91636 -11.82693 -11.52256 -11.24400 -10.91994 -10.52867 -9.58682 -9.03994 -8.16646 -6.28377 -0.25917 0.38014 0.95926 1.35714 1.45300 1.46321 1.57485 1.80755 2.44811 2.61147 3.17369 3.51438 3.53656 3.66893 4.06240 4.23571 4.40246 4.53054 4.63215 4.78065 4.90871 4.96655 5.13028 5.29300 5.40407 5.51907 5.63270 5.69227 5.84537 6.22534 6.34255 6.60594 6.88154 7.41199 8.95383 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.033327 B = 0.004660 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.962809 B = 6007.754904 C = 6512.726821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.042 3.958 10 C -0.028 4.028 11 C 0.112 3.888 12 N -0.280 5.280 13 N -0.504 5.504 14 H 0.452 0.548 15 C 0.129 3.871 16 C -0.135 4.135 17 C 0.013 3.987 18 Cl -0.051 7.051 19 C -0.152 4.152 20 C -0.027 4.027 21 C -0.195 4.195 22 H 0.263 0.737 23 H -0.003 1.003 24 H -0.018 1.018 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -16.875 -6.890 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.004 3.996 10 C -0.067 4.067 11 C -0.065 4.065 12 N -0.094 5.094 13 N -0.220 5.220 14 H 0.299 0.701 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.017 4.017 18 Cl -0.022 7.022 19 C -0.172 4.172 20 C -0.047 4.047 21 C -0.203 4.203 22 H 0.071 0.929 23 H 0.015 0.985 24 H 0.001 0.999 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.178 0.822 28 H 0.178 0.822 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.739 -16.940 -5.660 17.875 hybrid contribution -0.338 0.513 -0.254 0.665 sum 0.400 -16.426 -5.914 17.463 Atomic orbital electron populations 1.70121 1.07991 1.27751 1.51680 1.25992 0.95680 1.03456 0.94707 0.85419 0.78641 0.78234 0.78585 1.19503 1.21286 1.18485 1.21649 0.93901 0.91587 1.50491 0.91111 1.18838 0.93859 0.92075 0.94873 1.20159 0.96897 0.86228 1.03462 1.24047 0.97076 0.96506 0.88905 1.76552 1.12675 0.96369 1.23840 1.45868 1.51922 1.20870 1.03360 0.70107 1.18794 0.98249 0.96177 0.85557 1.19953 1.05418 1.00747 0.89708 1.20685 0.98513 0.92595 0.89881 1.98373 1.84311 1.59365 1.60125 1.20756 1.01406 0.93475 1.01586 1.20570 0.95834 0.98710 0.89633 1.20199 1.07769 0.97100 0.95239 0.92862 0.98502 0.99926 0.90734 0.88637 0.82171 0.82209 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.29 21.45 0.28 -56.73 15 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 15 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 15 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 15 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 15 7 C -0.54 -29.85 9.11 25.60 0.23 -29.62 15 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 15 9 C 0.04 2.20 4.96 29.85 0.15 2.35 15 10 C -0.03 -1.16 5.75 29.85 0.17 -0.99 15 11 C 0.11 4.34 6.69 44.80 0.30 4.64 15 12 N -0.28 -10.61 12.55 -43.68 -0.55 -11.16 15 13 N -0.50 -14.90 7.37 -51.53 -0.38 -15.28 15 14 H 0.45 9.69 8.96 -213.46 -1.91 7.78 15 15 C 0.13 3.80 7.33 39.21 0.29 4.08 15 16 C -0.14 -3.13 9.84 22.39 0.22 -2.91 15 17 C 0.01 0.29 6.31 22.35 0.14 0.43 15 18 Cl -0.05 -0.94 28.93 -2.72 -0.08 -1.02 15 19 C -0.15 -3.55 9.74 22.05 0.21 -3.33 15 20 C -0.03 -0.77 10.05 22.25 0.22 -0.54 15 21 C -0.20 -6.58 6.33 -20.24 -0.13 -6.71 15 22 H 0.26 15.06 8.31 -92.71 -0.77 14.29 15 23 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 15 24 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 15 25 H 0.07 3.01 8.14 -2.39 -0.02 2.99 15 26 H 0.10 3.50 8.14 -2.39 -0.02 3.48 15 27 H 0.16 2.73 8.06 -2.91 -0.02 2.71 15 28 H 0.16 2.87 8.06 -2.91 -0.02 2.85 15 29 H 0.15 3.88 8.06 -2.91 -0.02 3.86 15 Total: -1.00 -66.82 276.32 2.84 -63.98 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -0.73 Total: 6.81 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 2.27 Total: -32.17 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -0.64 Total: -83.17 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -66.82 2.84 -63.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260787340.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.075 kcal (2) G-P(sol) polarization free energy of solvation -66.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds