Wall clock time and date at job start Mon Mar 30 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35967 * 117.00033 * 2 1 4 4 C 1.38172 * 119.89743 * 359.72764 * 3 2 1 5 5 C 1.38832 * 120.12814 * 180.28007 * 4 3 2 6 6 C 1.36000 * 120.64283 * 359.97438 * 5 4 3 7 7 C 1.41833 * 120.60568 * 0.02562 * 6 5 4 8 8 C 1.40449 * 128.40872 * 180.02562 * 7 6 5 9 9 O 1.35637 * 122.62427 * 0.02562 * 8 7 6 10 10 C 1.37632 * 114.74289 * 180.02562 * 8 7 6 11 11 C 1.39691 * 124.85689 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99913 * 353.24877 * 11 10 8 13 13 C 1.40024 * 119.99696 * 173.24542 * 11 10 8 14 14 N 1.30912 * 120.00472 * 6.57735 * 13 11 10 15 15 Si 1.86803 * 119.99611 * 186.57083 * 13 11 10 16 16 H 1.48496 * 109.46961 * 94.99058 * 15 13 11 17 17 H 1.48508 * 109.46839 * 214.98835 * 15 13 11 18 18 H 1.48497 * 109.47531 * 334.98883 * 15 13 11 19 19 S 1.75428 * 110.28231 * 0.02562 * 10 8 7 20 20 C 1.39976 * 118.68383 * 0.02562 * 7 6 5 21 21 H 1.09000 * 109.47553 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46857 * 300.00085 * 1 2 3 23 23 H 1.09001 * 109.47152 * 59.99282 * 1 2 3 24 24 H 1.07992 * 119.93333 * 0.26891 * 4 3 2 25 25 H 1.08001 * 119.67589 * 179.97438 * 5 4 3 26 26 H 1.08004 * 119.69431 * 179.97438 * 6 5 4 27 27 H 0.96703 * 113.99845 * 270.02208 * 9 8 7 28 28 H 0.96997 * 120.00319 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2917 2.3689 -0.0057 5 6 1.9170 3.6084 -0.0116 6 6 3.2739 3.7003 -0.0113 7 6 4.0768 2.5311 -0.0056 8 6 5.4780 2.4349 -0.0039 9 8 6.2858 3.5244 -0.0074 10 6 5.9670 1.1484 0.0015 11 6 7.3222 0.8094 0.0036 12 1 8.0715 1.5789 -0.1091 13 6 7.7090 -0.5282 0.1518 14 7 6.8043 -1.4744 0.1591 15 14 9.5162 -0.9625 0.3389 16 1 9.8514 -1.0752 1.7812 17 1 9.7862 -2.2582 -0.3348 18 1 10.3476 0.1004 -0.2809 19 16 4.6450 -0.0047 0.0041 20 6 3.4449 1.2821 -0.0007 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 0.2134 2.3092 -0.0057 25 1 1.3201 4.5085 -0.0164 26 1 3.7444 4.6725 -0.0164 27 1 6.5206 3.8371 -0.8918 28 1 7.0722 -2.4009 0.2622 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260898433.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:54 Heat of formation + Delta-G solvation = -82.346572 kcal Electronic energy + Delta-G solvation = -15589.720498 eV Core-core repulsion = 12888.807693 eV Total energy + Delta-G solvation = -2700.912805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81081 -39.27141 -37.37582 -36.17289 -33.84654 -31.07302 -30.65665 -28.24239 -26.76800 -24.03831 -22.86082 -21.28043 -20.06725 -18.66762 -17.85185 -17.60129 -16.63658 -16.55053 -16.44553 -16.01722 -15.29171 -15.22107 -14.20455 -14.16381 -13.76977 -13.55503 -13.34784 -13.21776 -12.66849 -12.38469 -12.20187 -12.12127 -11.88831 -11.75864 -11.09733 -11.02518 -10.85987 -9.67276 -9.29872 -8.97518 -8.05709 -6.57619 0.26087 0.70308 1.25786 1.33432 1.35349 1.53604 1.75024 1.86964 2.12052 2.53019 2.79696 3.14197 4.13687 4.18346 4.36163 4.39454 4.44238 4.55368 4.68345 4.73661 4.85540 5.11687 5.28196 5.41318 5.50230 5.71592 5.84981 5.97069 6.07777 6.29468 6.47702 6.66492 7.37452 7.89090 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030200 B = 0.007881 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.936649 B = 3551.874519 C = 4457.270946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.343 6.343 3 C 0.174 3.826 4 C -0.274 4.274 5 C -0.066 4.066 6 C -0.192 4.192 7 C 0.003 3.997 8 C -0.194 4.194 9 O -0.476 6.476 10 C -0.004 4.004 11 C -0.389 4.389 12 H 0.103 0.897 13 C 0.014 3.986 14 N -0.791 5.791 15 Si 1.017 2.983 16 H -0.259 1.259 17 H -0.254 1.254 18 H -0.252 1.252 19 S 0.155 5.845 20 C -0.318 4.318 21 H 0.117 0.883 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.151 0.849 25 H 0.149 0.851 26 H 0.113 0.887 27 H 0.350 0.650 28 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 -0.162 -1.288 5.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.257 6.257 3 C 0.125 3.875 4 C -0.295 4.295 5 C -0.086 4.086 6 C -0.212 4.212 7 C -0.005 4.005 8 C -0.245 4.245 9 O -0.282 6.282 10 C -0.124 4.124 11 C -0.422 4.422 12 H 0.121 0.879 13 C -0.205 4.205 14 N -0.417 5.417 15 Si 0.834 3.166 16 H -0.183 1.183 17 H -0.178 1.178 18 H -0.175 1.175 19 S 0.414 5.586 20 C -0.433 4.433 21 H 0.136 0.864 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.169 0.831 25 H 0.167 0.833 26 H 0.132 0.868 27 H 0.201 0.799 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.248 -2.197 -0.647 5.726 hybrid contribution 0.572 1.606 -0.454 1.764 sum -4.676 -0.591 -1.102 4.840 Atomic orbital electron populations 1.23305 0.76550 1.05198 1.02239 1.86038 1.23543 1.27442 1.88669 1.18338 0.89068 0.85033 0.95036 1.20962 0.99925 0.91236 1.17327 1.20526 0.93497 0.97686 0.96857 1.20625 0.94169 0.96046 1.10400 1.18196 0.92897 0.93001 0.96406 1.17142 0.87097 0.85666 1.34551 1.84800 1.67794 1.44276 1.31339 1.22176 0.98392 0.95139 0.96695 1.19569 0.91330 0.94829 1.36487 0.87888 1.27396 1.07118 0.94702 0.91327 1.68775 1.38268 1.03844 1.30818 0.84631 0.72759 0.79256 0.79942 1.18300 1.17822 1.17513 1.84625 0.91176 1.03659 1.79179 1.22757 0.96481 1.00856 1.23177 0.86433 0.91784 0.91649 0.83134 0.83323 0.86849 0.79940 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 15 2 O -0.34 -13.62 10.47 -93.18 -0.98 -14.60 15 3 C 0.17 7.72 6.71 22.69 0.15 7.87 15 4 C -0.27 -10.16 9.03 22.40 0.20 -9.96 15 5 C -0.07 -2.44 9.94 21.89 0.22 -2.22 15 6 C -0.19 -8.53 9.95 22.64 0.23 -8.31 15 7 C 0.00 0.17 5.86 -21.43 -0.13 0.05 15 8 C -0.19 -10.63 6.85 22.67 0.16 -10.48 15 9 O -0.48 -23.88 13.16 -89.51 -1.18 -25.05 15 10 C 0.00 -0.21 6.12 22.48 0.14 -0.07 15 11 C -0.39 -20.18 9.07 23.05 0.21 -19.97 15 12 H 0.10 5.15 7.74 -2.91 -0.02 5.13 15 13 C 0.01 0.66 5.49 85.26 0.47 1.13 15 14 N -0.79 -37.64 10.62 21.85 0.23 -37.41 15 15 Si 1.02 34.29 29.57 68.60 2.03 36.32 15 16 H -0.26 -8.53 7.11 99.48 0.71 -7.82 15 17 H -0.25 -7.88 7.11 99.48 0.71 -7.17 15 18 H -0.25 -8.29 7.11 99.48 0.71 -7.58 15 19 S 0.15 8.21 20.11 -56.49 -1.14 7.08 15 20 C -0.32 -16.43 6.41 23.13 0.15 -16.29 15 21 H 0.12 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.06 1.45 7.66 -2.38 -0.02 1.43 15 23 H 0.06 1.46 7.64 -2.39 -0.02 1.44 15 24 H 0.15 4.29 6.25 -2.91 -0.02 4.27 15 25 H 0.15 4.16 8.06 -2.91 -0.02 4.14 15 26 H 0.11 4.68 8.06 -2.91 -0.02 4.66 15 27 H 0.35 14.48 9.06 -74.06 -0.67 13.81 15 28 H 0.32 13.08 8.30 -92.71 -0.77 12.31 15 Total: -1.00 -65.75 261.41 2.41 -63.34 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.54 Total: 26.91 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 2.90 Total: -56.59 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.23 Total: -37.41 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -2.15 Total: -39.65 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Atomic # 16 Polarization: 8.21 SS G_CDS: -1.14 Total: 7.08 kcal Total: -65.75 2.41 -63.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898433.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.010 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds