Wall clock time and date at job start Mon Mar 30 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35994 * 117.00123 * 2 1 4 4 C 1.39315 * 119.83540 * 359.73251 * 3 2 1 5 5 C 1.37636 * 120.15900 * 180.27564 * 4 3 2 6 6 C 1.39630 * 120.53688 * 359.97438 * 5 4 3 7 7 S 1.76010 * 129.98161 * 179.97438 * 6 5 4 8 8 C 1.75421 * 91.91859 * 180.02562 * 7 6 5 9 9 C 1.39656 * 124.84898 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99840 * 173.21116 * 9 8 7 11 11 C 1.40043 * 119.99943 * 353.21849 * 9 8 7 12 12 N 1.30904 * 120.00449 * 6.56815 * 11 9 8 13 13 Si 1.86798 * 120.00055 * 186.56924 * 11 9 8 14 14 H 1.48507 * 109.46959 * 94.98484 * 13 11 9 15 15 H 1.48494 * 109.47575 * 214.98432 * 13 11 9 16 16 H 1.48503 * 109.47037 * 334.98800 * 13 11 9 17 17 C 1.37631 * 110.29963 * 0.02562 * 8 7 6 18 18 O 1.35650 * 122.62582 * 180.02562 * 17 8 7 19 19 C 1.40070 * 119.90319 * 0.02562 * 6 5 4 20 20 C 1.37417 * 119.83991 * 180.02562 * 3 2 1 21 21 H 1.09001 * 109.46532 * 299.99522 * 1 2 3 22 22 H 1.08997 * 109.47252 * 59.99213 * 1 2 3 23 23 H 1.08997 * 109.46976 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.92019 * 0.26899 * 4 3 2 25 25 H 1.07991 * 119.73027 * 179.97438 * 5 4 3 26 26 H 0.97001 * 120.00274 * 179.97438 * 12 11 9 27 27 H 0.96699 * 114.00073 * 269.97656 * 18 17 8 28 28 H 1.08006 * 119.82408 * 359.69826 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2843 2.3779 -0.0056 5 6 1.9023 3.6077 -0.0114 6 6 3.2954 3.7017 -0.0111 7 16 4.3330 5.1234 -0.0182 8 6 5.7838 4.1373 -0.0129 9 6 7.0881 4.6366 -0.0147 10 1 7.9244 3.9628 0.0995 11 6 7.3115 6.0109 -0.1643 12 7 6.2998 6.8415 -0.1734 13 14 9.0535 6.6591 -0.3510 14 1 9.3737 6.8095 -1.7933 15 1 9.1655 7.9785 0.3211 16 1 10.0061 5.7045 0.2706 17 6 5.4531 2.8013 -0.0066 18 8 6.3863 1.8169 -0.0010 19 6 4.0738 2.5372 -0.0055 20 6 3.4189 1.2798 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2061 2.3168 -0.0056 25 1 1.3048 4.5073 -0.0162 26 1 6.4546 7.7935 -0.2767 27 1 6.6574 1.5269 -0.8828 28 1 4.0018 0.3705 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260921661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:16 Heat of formation + Delta-G solvation = -64.375914 kcal Electronic energy + Delta-G solvation = -15409.107602 eV Core-core repulsion = 12708.974064 eV Total energy + Delta-G solvation = -2700.133538 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23427 -37.54484 -35.65536 -34.40465 -31.79787 -29.90701 -28.85558 -26.69753 -25.26580 -21.92048 -21.55891 -19.52389 -18.09541 -17.13670 -16.15747 -15.98229 -15.24896 -15.18087 -14.72542 -14.38700 -13.64592 -12.97560 -12.75676 -12.63917 -12.16029 -11.92596 -11.86828 -11.70841 -11.61257 -10.96852 -10.75175 -10.47239 -10.14785 -10.10600 -9.45560 -9.08486 -8.95688 -8.17306 -7.43107 -7.29104 -6.24657 -4.72725 1.94606 2.40385 2.74456 2.80709 2.88124 3.17669 3.38166 3.51769 3.73682 3.91296 4.53446 4.87684 5.35949 5.44514 5.62978 5.68517 5.81381 6.01781 6.38342 6.44043 6.56603 6.63723 7.01183 7.10248 7.24376 7.33492 7.52788 7.65588 7.87709 8.02353 8.22666 8.30600 9.17594 9.53181 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.048269 B = 0.006202 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.942117 B = 4513.926525 C = 5071.669510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.127 3.873 4 C -0.268 4.268 5 C -0.020 4.020 6 C -0.284 4.284 7 S 0.151 5.849 8 C 0.034 3.966 9 C -0.361 4.361 10 H 0.105 0.895 11 C 0.050 3.950 12 N -0.768 5.768 13 Si 0.942 3.058 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.254 1.254 17 C -0.165 4.165 18 O -0.469 6.469 19 C 0.035 3.965 20 C -0.180 4.180 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.303 0.697 27 H 0.334 0.666 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -1.222 -1.552 4.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.243 6.243 3 C 0.081 3.919 4 C -0.288 4.288 5 C -0.043 4.043 6 C -0.398 4.398 7 S 0.410 5.590 8 C -0.086 4.086 9 C -0.395 4.395 10 H 0.123 0.877 11 C -0.173 4.173 12 N -0.394 5.394 13 Si 0.764 3.236 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.178 1.178 17 C -0.215 4.215 18 O -0.273 6.273 19 C 0.027 3.973 20 C -0.201 4.201 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.107 0.893 24 H 0.129 0.871 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.184 0.816 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.299 0.407 -0.933 4.418 hybrid contribution 0.622 -1.132 -0.636 1.440 sum -3.677 -0.725 -1.569 4.063 Atomic orbital electron populations 1.22847 0.79884 1.02521 1.00871 1.86010 1.20211 1.28204 1.89863 1.18447 0.91874 0.83119 0.98469 1.20567 0.98130 0.92218 1.17924 1.19972 0.91806 0.95991 0.96492 1.23251 0.97434 1.01076 1.18025 1.84739 0.93073 1.01997 1.79199 1.21720 0.97114 0.94280 0.95531 1.19314 0.92796 0.92419 1.34942 0.87683 1.26423 1.01476 0.96814 0.92541 1.68741 1.33114 1.06098 1.31406 0.85686 0.79247 0.78859 0.79795 1.18735 1.19453 1.17767 1.16807 0.85378 0.86268 1.33095 1.84909 1.58413 1.53932 1.30037 1.17807 0.92811 0.91554 0.95157 1.19812 0.90467 0.96746 1.13084 0.93294 0.93309 0.89341 0.87065 0.87520 0.88383 0.81644 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 15 2 O -0.33 -6.16 10.49 -19.72 -0.21 -6.37 15 3 C 0.13 2.70 6.66 -39.48 -0.26 2.44 15 4 C -0.27 -5.32 9.02 -39.40 -0.36 -5.68 15 5 C -0.02 -0.43 10.05 -39.28 -0.39 -0.82 15 6 C -0.28 -6.88 6.45 -38.38 -0.25 -7.13 15 7 S 0.15 3.67 20.14 -107.50 -2.17 1.51 15 8 C 0.03 0.88 6.12 -39.27 -0.24 0.64 15 9 C -0.36 -8.93 9.07 -38.38 -0.35 -9.27 15 10 H 0.11 2.53 7.74 -52.49 -0.41 2.12 15 11 C 0.05 1.12 5.49 -17.27 -0.09 1.02 15 12 N -0.77 -17.46 10.62 55.56 0.59 -16.87 15 13 Si 0.94 16.63 29.57 -169.99 -5.03 11.60 15 14 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 15 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 16 H -0.25 -4.49 7.11 56.52 0.40 -4.09 15 17 C -0.16 -4.31 6.85 -38.98 -0.27 -4.58 15 18 O -0.47 -11.44 13.16 -18.65 -0.25 -11.68 15 19 C 0.03 0.88 5.86 -107.03 -0.63 0.26 15 20 C -0.18 -4.26 9.93 -38.53 -0.38 -4.64 15 21 H 0.05 0.61 7.66 -51.93 -0.40 0.21 15 22 H 0.05 0.60 7.64 -51.93 -0.40 0.20 15 23 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.11 1.84 6.28 -52.49 -0.33 1.51 15 25 H 0.11 1.97 8.06 -52.49 -0.42 1.55 15 26 H 0.30 6.09 8.30 -40.82 -0.34 5.75 15 27 H 0.33 6.75 9.06 45.56 0.41 7.16 15 28 H 0.11 2.56 8.06 -52.48 -0.42 2.14 15 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -28.65 261.53 -6.86 -35.51 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.52 Total: 8.67 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.23 Total: -26.31 kcal Atomic # 7 Polarization: -17.46 SS G_CDS: 0.59 Total: -16.87 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.45 Total: -18.05 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.17 Total: 1.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.65 -6.86 -35.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260921661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.867 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds