Wall clock time and date at job start Mon Mar 30 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35994 * 117.00123 * 2 1 4 4 C 1.39315 * 119.83540 * 359.73251 * 3 2 1 5 5 C 1.37636 * 120.15900 * 180.27564 * 4 3 2 6 6 C 1.39630 * 120.53688 * 359.97438 * 5 4 3 7 7 S 1.76010 * 129.98161 * 179.97438 * 6 5 4 8 8 C 1.75421 * 91.91859 * 180.02562 * 7 6 5 9 9 C 1.39656 * 124.84898 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99840 * 173.21116 * 9 8 7 11 11 C 1.40043 * 119.99943 * 353.21849 * 9 8 7 12 12 N 1.30904 * 120.00449 * 6.56815 * 11 9 8 13 13 Si 1.86798 * 120.00055 * 186.56924 * 11 9 8 14 14 H 1.48507 * 109.46959 * 94.98484 * 13 11 9 15 15 H 1.48494 * 109.47575 * 214.98432 * 13 11 9 16 16 H 1.48503 * 109.47037 * 334.98800 * 13 11 9 17 17 C 1.37631 * 110.29963 * 0.02562 * 8 7 6 18 18 O 1.35650 * 122.62582 * 180.02562 * 17 8 7 19 19 C 1.40070 * 119.90319 * 0.02562 * 6 5 4 20 20 C 1.37417 * 119.83991 * 180.02562 * 3 2 1 21 21 H 1.09001 * 109.46532 * 299.99522 * 1 2 3 22 22 H 1.08997 * 109.47252 * 59.99213 * 1 2 3 23 23 H 1.08997 * 109.46976 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.92019 * 0.26899 * 4 3 2 25 25 H 1.07991 * 119.73027 * 179.97438 * 5 4 3 26 26 H 0.97001 * 120.00274 * 179.97438 * 12 11 9 27 27 H 0.96699 * 114.00073 * 269.97656 * 18 17 8 28 28 H 1.08006 * 119.82408 * 359.69826 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2843 2.3779 -0.0056 5 6 1.9023 3.6077 -0.0114 6 6 3.2954 3.7017 -0.0111 7 16 4.3330 5.1234 -0.0182 8 6 5.7838 4.1373 -0.0129 9 6 7.0881 4.6366 -0.0147 10 1 7.9244 3.9628 0.0995 11 6 7.3115 6.0109 -0.1643 12 7 6.2998 6.8415 -0.1734 13 14 9.0535 6.6591 -0.3510 14 1 9.3737 6.8095 -1.7933 15 1 9.1655 7.9785 0.3211 16 1 10.0061 5.7045 0.2706 17 6 5.4531 2.8013 -0.0066 18 8 6.3863 1.8169 -0.0010 19 6 4.0738 2.5372 -0.0055 20 6 3.4189 1.2798 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2061 2.3168 -0.0056 25 1 1.3048 4.5073 -0.0162 26 1 6.4546 7.7935 -0.2767 27 1 6.6574 1.5269 -0.8828 28 1 4.0018 0.3705 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260921661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:16 Heat of formation + Delta-G solvation = -83.210596 kcal Electronic energy + Delta-G solvation = -15409.924335 eV Core-core repulsion = 12708.974064 eV Total energy + Delta-G solvation = -2700.950271 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83099 -39.25197 -37.37524 -36.18815 -33.57255 -31.56043 -30.59157 -27.94565 -27.03158 -23.64140 -23.27721 -21.26561 -19.90110 -18.74568 -17.92208 -17.72186 -16.81120 -16.50656 -16.31781 -16.08791 -15.34657 -14.58921 -14.48133 -14.22127 -13.83280 -13.60281 -13.56022 -13.21560 -12.94605 -12.38687 -12.31155 -12.05030 -11.75441 -11.67202 -11.28700 -10.82336 -10.78158 -9.92914 -9.20909 -8.99542 -8.06404 -6.58504 0.20020 0.66425 1.23059 1.33880 1.37114 1.53568 1.73438 1.83283 2.11615 2.52721 2.77065 3.09007 4.00676 4.14243 4.28758 4.43342 4.46430 4.68071 4.75378 4.77239 4.84573 4.91054 5.29443 5.37766 5.51205 5.59969 5.75820 5.88490 6.08126 6.22333 6.47839 6.66700 7.36577 7.86998 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.048269 B = 0.006202 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.942117 B = 4513.926525 C = 5071.669510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.136 3.864 4 C -0.254 4.254 5 C -0.023 4.023 6 C -0.307 4.307 7 S 0.149 5.851 8 C 0.003 3.997 9 C -0.387 4.387 10 H 0.100 0.900 11 C 0.017 3.983 12 N -0.786 5.786 13 Si 1.015 2.985 14 H -0.254 1.254 15 H -0.255 1.255 16 H -0.257 1.257 17 C -0.201 4.201 18 O -0.480 6.480 19 C 0.010 3.990 20 C -0.210 4.210 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.121 0.879 24 H 0.155 0.845 25 H 0.137 0.863 26 H 0.317 0.683 27 H 0.348 0.652 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 -0.655 -1.770 5.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.089 3.911 4 C -0.274 4.274 5 C -0.045 4.045 6 C -0.421 4.421 7 S 0.408 5.592 8 C -0.117 4.117 9 C -0.420 4.420 10 H 0.118 0.882 11 C -0.203 4.203 12 N -0.412 5.412 13 Si 0.833 3.167 14 H -0.178 1.178 15 H -0.178 1.178 16 H -0.180 1.180 17 C -0.252 4.252 18 O -0.285 6.285 19 C 0.003 3.997 20 C -0.231 4.231 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.139 0.861 24 H 0.172 0.828 25 H 0.155 0.845 26 H 0.130 0.870 27 H 0.199 0.801 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.644 0.954 -1.154 5.840 hybrid contribution 0.837 -1.419 -0.570 1.744 sum -4.807 -0.466 -1.724 5.128 Atomic orbital electron populations 1.23300 0.76631 1.05289 1.02132 1.86009 1.23485 1.26893 1.89274 1.18533 0.91339 0.84709 0.96519 1.21013 1.00174 0.90926 1.15297 1.20400 0.90810 0.97920 0.95387 1.23515 0.98801 1.00423 1.19399 1.84369 0.92748 1.02282 1.79849 1.22073 0.98393 0.94825 0.96434 1.19563 0.92317 0.93953 1.36208 0.88182 1.27353 1.05778 0.95927 0.91290 1.68732 1.35027 1.07064 1.30335 0.84646 0.73526 0.78454 0.80107 1.17840 1.17845 1.18028 1.17125 0.86169 0.86680 1.35225 1.84812 1.58458 1.53876 1.31399 1.18033 0.92871 0.92806 0.96024 1.19883 0.92007 0.95938 1.15236 0.91986 0.91876 0.86124 0.82769 0.84527 0.86957 0.80102 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 15 2 O -0.34 -12.05 10.49 -93.48 -0.98 -13.03 15 3 C 0.14 5.59 6.66 22.34 0.15 5.73 15 4 C -0.25 -9.34 9.02 22.39 0.20 -9.14 15 5 C -0.02 -0.94 10.05 22.46 0.23 -0.71 15 6 C -0.31 -15.04 6.45 23.05 0.15 -14.89 15 7 S 0.15 7.42 20.14 -56.49 -1.14 6.28 15 8 C 0.00 0.15 6.12 22.47 0.14 0.29 15 9 C -0.39 -19.75 9.07 23.05 0.21 -19.54 15 10 H 0.10 5.02 7.74 -2.91 -0.02 4.99 15 11 C 0.02 0.76 5.49 85.27 0.47 1.22 15 12 N -0.79 -35.62 10.62 21.85 0.23 -35.39 15 13 Si 1.02 33.28 29.57 68.60 2.03 35.31 15 14 H -0.25 -7.97 7.11 99.48 0.71 -7.27 15 15 H -0.25 -7.70 7.11 99.48 0.71 -6.99 15 16 H -0.26 -8.45 7.11 99.48 0.71 -7.74 15 17 C -0.20 -11.06 6.85 22.66 0.16 -10.90 15 18 O -0.48 -24.68 13.16 -89.65 -1.18 -25.86 15 19 C 0.01 0.55 5.86 -21.42 -0.13 0.42 15 20 C -0.21 -10.10 9.93 22.95 0.23 -9.87 15 21 H 0.06 1.26 7.66 -2.39 -0.02 1.24 15 22 H 0.06 1.27 7.64 -2.39 -0.02 1.25 15 23 H 0.12 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.15 4.30 6.28 -2.91 -0.02 4.28 15 25 H 0.14 4.65 8.06 -2.92 -0.02 4.63 15 26 H 0.32 12.43 8.30 -92.71 -0.77 11.66 15 27 H 0.35 14.98 9.06 -74.06 -0.67 14.31 15 28 H 0.10 4.98 8.06 -2.91 -0.02 4.96 15 Total: -1.00 -63.67 261.53 2.41 -61.27 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.54 Total: 27.25 kcal Atomic # 6 Polarization: -58.72 SS G_CDS: 2.91 Total: -55.81 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.23 Total: -35.39 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.16 Total: -38.90 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 2.03 Total: 35.31 kcal Atomic # 16 Polarization: 7.42 SS G_CDS: -1.14 Total: 6.28 kcal Total: -63.67 2.41 -61.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260921661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.945 kcal (2) G-P(sol) polarization free energy of solvation -63.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds