Wall clock time and date at job start Mon Mar 30 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33652 * 124.51371 * 2 1 4 4 C 1.37697 * 115.07881 * 179.70442 * 3 2 1 5 5 C 1.36504 * 113.28210 * 0.49461 * 4 3 2 6 6 C 1.46787 * 125.45811 * 179.80139 * 5 4 3 7 7 N 1.32531 * 126.72511 * 180.02562 * 6 5 4 8 8 C 1.34109 * 105.51048 * 180.11823 * 7 6 5 9 9 C 1.50703 * 126.14963 * 179.84733 * 8 7 6 10 10 C 1.50701 * 109.47064 * 269.71232 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 N 1.30080 * 107.69868 * 359.58552 * 8 7 6 19 19 O 1.21283 * 110.57215 * 0.26176 * 18 8 7 20 20 S 1.70614 * 124.51253 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47464 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47051 * 300.00113 * 1 2 3 23 23 H 1.09007 * 109.46912 * 59.99652 * 1 2 3 24 24 H 1.07997 * 122.46372 * 359.97438 * 3 2 1 25 25 H 1.08004 * 123.36172 * 180.32694 * 4 3 2 26 26 H 1.09002 * 109.47152 * 149.71325 * 9 8 7 27 27 H 1.09001 * 109.46980 * 29.71425 * 9 8 7 28 28 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2643 1.1013 0.0000 4 6 3.6226 0.8756 0.0064 5 6 3.9494 -0.4498 0.0009 6 6 5.3141 -0.9904 0.0014 7 7 5.6597 -2.2698 -0.0043 8 6 7.0007 -2.2791 0.0016 9 6 7.8813 -3.5021 0.0018 10 6 8.1743 -3.9099 1.4227 11 1 7.7636 -3.3407 2.2435 12 6 8.9659 -5.0103 1.6747 13 7 9.4656 -5.7037 0.6752 14 14 9.3284 -5.5162 3.4360 15 1 8.6528 -4.5793 4.3692 16 1 8.8259 -6.8942 3.6686 17 1 10.7943 -5.4777 3.6702 18 7 7.4048 -1.0426 0.0015 19 8 6.4578 -0.2848 0.0014 20 16 2.4737 -1.4059 0.0006 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8420 2.0952 -0.0004 25 1 4.3564 1.6681 0.0124 26 1 8.8161 -3.2768 -0.5117 27 1 7.3715 -4.3169 -0.5124 28 1 10.0228 -6.4777 0.8526 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260952625.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:50 Heat of formation + Delta-G solvation = 87.938282 kcal Electronic energy + Delta-G solvation = -14885.113961 eV Core-core repulsion = 12223.878013 eV Total energy + Delta-G solvation = -2661.235948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.76379 -38.20356 -35.46261 -33.60988 -32.74355 -31.13756 -28.64173 -27.07218 -24.19621 -23.69888 -22.79033 -21.40578 -18.95759 -17.54230 -17.44176 -16.59709 -16.26066 -15.53593 -14.66373 -14.28816 -14.10799 -13.26472 -12.92699 -12.59981 -12.53505 -12.41678 -12.20006 -11.78164 -11.41552 -11.16923 -10.87498 -10.79762 -10.76856 -10.33489 -10.13312 -9.92202 -9.18333 -8.65951 -8.52048 -8.26620 -6.14457 -4.18199 0.34008 1.24895 1.85959 1.89792 2.61540 3.17812 3.27253 3.34503 3.35403 3.40875 4.27703 4.39789 4.59461 4.96103 5.01913 5.20171 5.24047 5.25737 5.42457 5.54515 5.65081 5.87633 6.06998 6.23417 6.47809 6.77637 7.30453 7.38215 7.79791 8.10313 8.82190 8.91858 9.45206 10.96523 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.037084 B = 0.004754 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.869529 B = 5888.589541 C = 6223.887274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.222 4.222 3 C -0.150 4.150 4 C -0.085 4.085 5 C -0.151 4.151 6 C 0.216 3.784 7 N -0.467 5.467 8 C 0.223 3.777 9 C 0.099 3.901 10 C -0.514 4.514 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.397 5.397 19 O 0.073 5.927 20 S 0.273 5.727 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.143 0.857 25 H 0.152 0.848 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.457 11.972 -2.144 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.342 4.342 3 C -0.180 4.180 4 C -0.119 4.119 5 C -0.271 4.271 6 C -0.003 4.003 7 N -0.202 5.202 8 C -0.049 4.049 9 C 0.060 3.940 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.107 5.107 19 O 0.017 5.983 20 S 0.541 5.459 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.161 0.839 25 H 0.170 0.830 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.848 10.016 -2.202 19.724 hybrid contribution 0.545 1.431 0.959 1.807 sum -16.302 11.447 -1.243 19.959 Atomic orbital electron populations 1.20337 0.87422 1.03089 1.03159 1.24367 1.01774 0.98854 1.09209 1.19772 0.92249 0.99605 1.06402 1.20733 0.96727 0.94545 0.99935 1.21508 0.91285 0.97025 1.17271 1.25005 0.89378 0.86257 0.99636 1.72317 1.12461 1.15711 1.19704 1.26840 0.88265 0.95130 0.94632 1.17898 0.91802 0.84853 0.99441 1.20870 1.31490 1.12450 0.90550 0.92483 1.24949 0.95338 0.95886 0.97848 1.69948 1.33585 1.18554 1.30800 0.86348 0.78105 0.78481 0.84023 1.19689 1.20669 1.20719 1.74607 1.08449 1.03896 1.23724 1.85404 1.11120 1.35255 1.66561 1.83465 0.91101 1.04833 1.66487 0.91307 0.90382 0.90394 0.83945 0.83017 0.93275 0.92840 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.33 36.01 0.37 -0.15 15 2 C -0.22 -2.14 6.27 -35.91 -0.23 -2.36 15 3 C -0.15 -1.44 10.00 -41.39 -0.41 -1.86 15 4 C -0.08 -0.99 10.26 -40.40 -0.41 -1.41 15 5 C -0.15 -2.24 6.46 -36.75 -0.24 -2.48 15 6 C 0.22 4.14 8.25 -14.09 -0.12 4.03 15 7 N -0.47 -10.56 11.60 -10.24 -0.12 -10.67 15 8 C 0.22 5.53 7.38 -156.61 -1.16 4.37 15 9 C 0.10 2.69 5.60 -29.03 -0.16 2.53 15 10 C -0.51 -15.00 9.09 -34.44 -0.31 -15.31 15 11 H 0.06 1.68 7.74 -52.49 -0.41 1.28 15 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 13 N -0.89 -26.35 13.29 55.43 0.74 -25.61 15 14 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 15 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 18 N -0.40 -9.32 12.14 31.29 0.38 -8.94 15 19 O 0.07 1.48 11.34 16.17 0.18 1.67 15 20 S 0.27 3.37 23.01 -107.50 -2.47 0.90 15 21 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 15 22 H 0.08 0.42 8.14 -51.93 -0.42 0.00 15 23 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 15 24 H 0.14 1.00 8.06 -52.49 -0.42 0.58 15 25 H 0.15 1.53 8.06 -52.48 -0.42 1.10 15 26 H 0.05 1.38 8.14 -51.93 -0.42 0.96 15 27 H 0.05 1.50 8.14 -51.93 -0.42 1.07 15 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 274.19 15.07 4.13 4.13 Total: -1.00 -31.93 274.19 -7.44 -39.38 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: -2.50 Total: -6.80 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.76 Total: -10.96 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 1.00 Total: -45.22 kcal Atomic # 8 Polarization: 1.48 SS G_CDS: 0.18 Total: 1.67 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.47 Total: 0.90 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.93 -7.44 -39.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952625.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.317 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds