Wall clock time and date at job start Mon Mar 30 2020 05:50:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.33652 * 124.51371 * 2 1
4 4 C 1.37697 * 115.07881 * 179.70442 * 3 2 1
5 5 C 1.36504 * 113.28210 * 0.49461 * 4 3 2
6 6 C 1.46787 * 125.45811 * 179.80139 * 5 4 3
7 7 N 1.32531 * 126.72511 * 180.02562 * 6 5 4
8 8 C 1.34109 * 105.51048 * 180.11823 * 7 6 5
9 9 C 1.50703 * 126.14963 * 179.84733 * 8 7 6
10 10 C 1.50701 * 109.47064 * 269.71232 * 9 8 7
11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8
12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8
13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9
14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9
15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10
16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10
17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10
18 18 N 1.30080 * 107.69868 * 359.58552 * 8 7 6
19 19 O 1.21283 * 110.57215 * 0.26176 * 18 8 7
20 20 S 1.70614 * 124.51253 * 179.97438 * 2 1 3
21 21 H 1.09002 * 109.47464 * 179.97438 * 1 2 3
22 22 H 1.08995 * 109.47051 * 300.00113 * 1 2 3
23 23 H 1.09007 * 109.46912 * 59.99652 * 1 2 3
24 24 H 1.07997 * 122.46372 * 359.97438 * 3 2 1
25 25 H 1.08004 * 123.36172 * 180.32694 * 4 3 2
26 26 H 1.09002 * 109.47152 * 149.71325 * 9 8 7
27 27 H 1.09001 * 109.46980 * 29.71425 * 9 8 7
28 28 H 0.97002 * 119.99768 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2643 1.1013 0.0000
4 6 3.6226 0.8756 0.0064
5 6 3.9494 -0.4498 0.0009
6 6 5.3141 -0.9904 0.0014
7 7 5.6597 -2.2698 -0.0043
8 6 7.0007 -2.2791 0.0016
9 6 7.8813 -3.5021 0.0018
10 6 8.1743 -3.9099 1.4227
11 1 7.7636 -3.3407 2.2435
12 6 8.9659 -5.0103 1.6747
13 7 9.4656 -5.7037 0.6752
14 14 9.3284 -5.5162 3.4360
15 1 8.6528 -4.5793 4.3692
16 1 8.8259 -6.8942 3.6686
17 1 10.7943 -5.4777 3.6702
18 7 7.4048 -1.0426 0.0015
19 8 6.4578 -0.2848 0.0014
20 16 2.4737 -1.4059 0.0006
21 1 -0.3634 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5139 -0.8900
24 1 1.8420 2.0952 -0.0004
25 1 4.3564 1.6681 0.0124
26 1 8.8161 -3.2768 -0.5117
27 1 7.3715 -4.3169 -0.5124
28 1 10.0228 -6.4777 0.8526
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260952625.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:50:50
Heat of formation + Delta-G solvation = 66.653412 kcal
Electronic energy + Delta-G solvation = -14886.036942 eV
Core-core repulsion = 12223.878013 eV
Total energy + Delta-G solvation = -2662.158929 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 250.052 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-46.48119 -39.09919 -37.24441 -35.42223 -34.36058 -32.35832 -30.67875 -28.11306
-26.23179 -24.68826 -24.39409 -22.86650 -20.21643 -19.33685 -18.57219 -18.43797
-18.01155 -16.78432 -16.58381 -15.11791 -14.99473 -14.76488 -14.57997 -14.00924
-13.85286 -13.62571 -13.44777 -13.15604 -13.03869 -12.71260 -12.64730 -12.51318
-12.17804 -12.05826 -11.79473 -11.73938 -11.03057 -10.72788 -9.60292 -9.40434
-8.34757 -6.48487 -0.76388 0.24638 0.54246 0.96843 1.25812 1.36987
1.37351 1.51024 1.80683 1.95026 2.33888 2.73287 2.97864 3.22806
3.88361 4.08428 4.27554 4.39740 4.64842 4.71212 4.82562 4.94485
5.03437 5.11853 5.14387 5.20503 5.23100 5.46010 5.54350 5.89539
6.56339 7.19509 7.23795 8.77196
Molecular weight = 250.05amu
Principal moments of inertia in cm(-1)
A = 0.037084 B = 0.004754 C = 0.004498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 754.869529 B = 5888.589541 C = 6223.887274
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C -0.186 4.186
3 C -0.158 4.158
4 C -0.050 4.050
5 C -0.213 4.213
6 C 0.244 3.756
7 N -0.501 5.501
8 C 0.202 3.798
9 C 0.109 3.891
10 C -0.539 4.539
11 H 0.046 0.954
12 C 0.013 3.987
13 N -0.920 5.920
14 Si 0.976 3.024
15 H -0.271 1.271
16 H -0.268 1.268
17 H -0.269 1.269
18 N -0.415 5.415
19 O 0.083 5.917
20 S 0.245 5.755
21 H 0.073 0.927
22 H 0.098 0.902
23 H 0.099 0.901
24 H 0.181 0.819
25 H 0.170 0.830
26 H 0.029 0.971
27 H 0.034 0.966
28 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.923 13.773 -1.124 24.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.307 4.307
3 C -0.187 4.187
4 C -0.086 4.086
5 C -0.332 4.332
6 C 0.028 3.972
7 N -0.236 5.236
8 C -0.070 4.070
9 C 0.070 3.930
10 C -0.577 4.577
11 H 0.064 0.936
12 C -0.187 4.187
13 N -0.559 5.559
14 Si 0.799 3.201
15 H -0.196 1.196
16 H -0.193 1.193
17 H -0.194 1.194
18 N -0.125 5.125
19 O 0.025 5.975
20 S 0.513 5.487
21 H 0.092 0.908
22 H 0.117 0.883
23 H 0.118 0.882
24 H 0.198 0.802
25 H 0.187 0.813
26 H 0.047 0.953
27 H 0.052 0.948
28 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -19.320 11.802 -1.196 22.672
hybrid contribution 1.037 1.054 0.582 1.589
sum -18.284 12.857 -0.614 22.360
Atomic orbital electron populations
1.20570 0.84624 1.04193 1.05077 1.24894 1.03288 0.97245 1.05269
1.20123 0.91043 1.01297 1.06237 1.21166 0.98366 0.93489 0.95582
1.21616 0.89562 0.98762 1.23239 1.25642 0.90488 0.85156 0.95961
1.72239 1.11254 1.17712 1.22371 1.26335 0.89116 0.94837 0.96697
1.17511 0.91277 0.85676 0.98492 1.21053 1.32483 1.13258 0.90954
0.93553 1.25891 0.94620 0.95459 1.02681 1.70045 1.33754 1.18936
1.33146 0.85243 0.78391 0.78388 0.78070 1.19558 1.19278 1.19434
1.74524 1.09853 1.03542 1.24585 1.85333 1.11163 1.34354 1.66639
1.83607 0.91050 1.06830 1.67190 0.90774 0.88331 0.88221 0.80193
0.81302 0.95287 0.94753 0.91866
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.71 10.33 71.24 0.74 0.03 15
2 C -0.19 -2.90 6.27 24.65 0.15 -2.74 15
3 C -0.16 -2.34 10.00 21.10 0.21 -2.13 15
4 C -0.05 -1.02 10.26 21.74 0.22 -0.80 15
5 C -0.21 -6.12 6.46 24.10 0.16 -5.96 15
6 C 0.24 9.55 8.25 86.93 0.72 10.27 15
7 N -0.50 -23.68 11.60 -302.47 -3.51 -27.19 15
8 C 0.20 10.54 7.38 138.55 1.02 11.57 15
9 C 0.11 6.33 5.60 29.10 0.16 6.49 15
10 C -0.54 -32.67 9.09 25.60 0.23 -32.43 15
11 H 0.05 2.84 7.74 -2.91 -0.02 2.81 15
12 C 0.01 0.78 5.46 84.66 0.46 1.24 15
13 N -0.92 -55.66 13.29 21.45 0.28 -55.37 15
14 Si 0.98 45.34 29.54 68.60 2.03 47.37 15
15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 15
16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15
17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15
18 N -0.42 -20.23 12.14 -58.03 -0.70 -20.93 15
19 O 0.08 3.42 11.34 67.92 0.77 4.19 15
20 S 0.25 5.78 23.01 -56.49 -1.30 4.48 15
21 H 0.07 0.59 8.11 -2.39 -0.02 0.57 15
22 H 0.10 0.53 8.14 -2.39 -0.02 0.51 15
23 H 0.10 0.51 8.14 -2.38 -0.02 0.49 15
24 H 0.18 1.43 8.06 -2.91 -0.02 1.40 15
25 H 0.17 2.83 8.06 -2.91 -0.02 2.81 15
26 H 0.03 1.75 8.14 -2.39 -0.02 1.73 15
27 H 0.03 2.06 8.14 -2.39 -0.02 2.04 15
28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15
Total: -1.00 -72.06 274.19 2.83 -69.23
By element:
Atomic # 1 Polarization: -8.49 SS G_CDS: 1.18 Total: -7.31 kcal
Atomic # 6 Polarization: -18.55 SS G_CDS: 4.08 Total: -14.47 kcal
Atomic # 7 Polarization: -99.56 SS G_CDS: -3.93 Total: -103.49 kcal
Atomic # 8 Polarization: 3.42 SS G_CDS: 0.77 Total: 4.19 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal
Atomic # 16 Polarization: 5.78 SS G_CDS: -1.30 Total: 4.48 kcal
Total: -72.06 2.83 -69.23 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260952625.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.882 kcal
(2) G-P(sol) polarization free energy of solvation -72.058 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds