Wall clock time and date at job start Mon Mar 30 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33652 * 124.51371 * 2 1 4 4 C 1.37697 * 115.07881 * 179.70442 * 3 2 1 5 5 C 1.36504 * 113.28210 * 0.49461 * 4 3 2 6 6 C 1.46787 * 125.45811 * 179.80139 * 5 4 3 7 7 N 1.32531 * 126.72511 * 180.02562 * 6 5 4 8 8 C 1.34109 * 105.51048 * 180.11823 * 7 6 5 9 9 C 1.50703 * 126.14963 * 179.84733 * 8 7 6 10 10 C 1.50701 * 109.47064 * 269.71232 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 N 1.30080 * 107.69868 * 359.58552 * 8 7 6 19 19 O 1.21283 * 110.57215 * 0.26176 * 18 8 7 20 20 S 1.70614 * 124.51253 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47464 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47051 * 300.00113 * 1 2 3 23 23 H 1.09007 * 109.46912 * 59.99652 * 1 2 3 24 24 H 1.07997 * 122.46372 * 359.97438 * 3 2 1 25 25 H 1.08004 * 123.36172 * 180.32694 * 4 3 2 26 26 H 1.09002 * 109.47152 * 149.71325 * 9 8 7 27 27 H 1.09001 * 109.46980 * 29.71425 * 9 8 7 28 28 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2643 1.1013 0.0000 4 6 3.6226 0.8756 0.0064 5 6 3.9494 -0.4498 0.0009 6 6 5.3141 -0.9904 0.0014 7 7 5.6597 -2.2698 -0.0043 8 6 7.0007 -2.2791 0.0016 9 6 7.8813 -3.5021 0.0018 10 6 8.1743 -3.9099 1.4227 11 1 7.7636 -3.3407 2.2435 12 6 8.9659 -5.0103 1.6747 13 7 9.4656 -5.7037 0.6752 14 14 9.3284 -5.5162 3.4360 15 1 8.6528 -4.5793 4.3692 16 1 8.8259 -6.8942 3.6686 17 1 10.7943 -5.4777 3.6702 18 7 7.4048 -1.0426 0.0015 19 8 6.4578 -0.2848 0.0014 20 16 2.4737 -1.4059 0.0006 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8420 2.0952 -0.0004 25 1 4.3564 1.6681 0.0124 26 1 8.8161 -3.2768 -0.5117 27 1 7.3715 -4.3169 -0.5124 28 1 10.0228 -6.4777 0.8526 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260952625.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:50 Heat of formation + Delta-G solvation = 66.653412 kcal Electronic energy + Delta-G solvation = -14886.036942 eV Core-core repulsion = 12223.878013 eV Total energy + Delta-G solvation = -2662.158929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -46.48119 -39.09919 -37.24441 -35.42223 -34.36058 -32.35832 -30.67875 -28.11306 -26.23179 -24.68826 -24.39409 -22.86650 -20.21643 -19.33685 -18.57219 -18.43797 -18.01155 -16.78432 -16.58381 -15.11791 -14.99473 -14.76488 -14.57997 -14.00924 -13.85286 -13.62571 -13.44777 -13.15604 -13.03869 -12.71260 -12.64730 -12.51318 -12.17804 -12.05826 -11.79473 -11.73938 -11.03057 -10.72788 -9.60292 -9.40434 -8.34757 -6.48487 -0.76388 0.24638 0.54246 0.96843 1.25812 1.36987 1.37351 1.51024 1.80683 1.95026 2.33888 2.73287 2.97864 3.22806 3.88361 4.08428 4.27554 4.39740 4.64842 4.71212 4.82562 4.94485 5.03437 5.11853 5.14387 5.20503 5.23100 5.46010 5.54350 5.89539 6.56339 7.19509 7.23795 8.77196 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.037084 B = 0.004754 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.869529 B = 5888.589541 C = 6223.887274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.186 4.186 3 C -0.158 4.158 4 C -0.050 4.050 5 C -0.213 4.213 6 C 0.244 3.756 7 N -0.501 5.501 8 C 0.202 3.798 9 C 0.109 3.891 10 C -0.539 4.539 11 H 0.046 0.954 12 C 0.013 3.987 13 N -0.920 5.920 14 Si 0.976 3.024 15 H -0.271 1.271 16 H -0.268 1.268 17 H -0.269 1.269 18 N -0.415 5.415 19 O 0.083 5.917 20 S 0.245 5.755 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.181 0.819 25 H 0.170 0.830 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.923 13.773 -1.124 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.307 4.307 3 C -0.187 4.187 4 C -0.086 4.086 5 C -0.332 4.332 6 C 0.028 3.972 7 N -0.236 5.236 8 C -0.070 4.070 9 C 0.070 3.930 10 C -0.577 4.577 11 H 0.064 0.936 12 C -0.187 4.187 13 N -0.559 5.559 14 Si 0.799 3.201 15 H -0.196 1.196 16 H -0.193 1.193 17 H -0.194 1.194 18 N -0.125 5.125 19 O 0.025 5.975 20 S 0.513 5.487 21 H 0.092 0.908 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.198 0.802 25 H 0.187 0.813 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.320 11.802 -1.196 22.672 hybrid contribution 1.037 1.054 0.582 1.589 sum -18.284 12.857 -0.614 22.360 Atomic orbital electron populations 1.20570 0.84624 1.04193 1.05077 1.24894 1.03288 0.97245 1.05269 1.20123 0.91043 1.01297 1.06237 1.21166 0.98366 0.93489 0.95582 1.21616 0.89562 0.98762 1.23239 1.25642 0.90488 0.85156 0.95961 1.72239 1.11254 1.17712 1.22371 1.26335 0.89116 0.94837 0.96697 1.17511 0.91277 0.85676 0.98492 1.21053 1.32483 1.13258 0.90954 0.93553 1.25891 0.94620 0.95459 1.02681 1.70045 1.33754 1.18936 1.33146 0.85243 0.78391 0.78388 0.78070 1.19558 1.19278 1.19434 1.74524 1.09853 1.03542 1.24585 1.85333 1.11163 1.34354 1.66639 1.83607 0.91050 1.06830 1.67190 0.90774 0.88331 0.88221 0.80193 0.81302 0.95287 0.94753 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.33 71.24 0.74 0.03 15 2 C -0.19 -2.90 6.27 24.65 0.15 -2.74 15 3 C -0.16 -2.34 10.00 21.10 0.21 -2.13 15 4 C -0.05 -1.02 10.26 21.74 0.22 -0.80 15 5 C -0.21 -6.12 6.46 24.10 0.16 -5.96 15 6 C 0.24 9.55 8.25 86.93 0.72 10.27 15 7 N -0.50 -23.68 11.60 -302.47 -3.51 -27.19 15 8 C 0.20 10.54 7.38 138.55 1.02 11.57 15 9 C 0.11 6.33 5.60 29.10 0.16 6.49 15 10 C -0.54 -32.67 9.09 25.60 0.23 -32.43 15 11 H 0.05 2.84 7.74 -2.91 -0.02 2.81 15 12 C 0.01 0.78 5.46 84.66 0.46 1.24 15 13 N -0.92 -55.66 13.29 21.45 0.28 -55.37 15 14 Si 0.98 45.34 29.54 68.60 2.03 47.37 15 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 15 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 18 N -0.42 -20.23 12.14 -58.03 -0.70 -20.93 15 19 O 0.08 3.42 11.34 67.92 0.77 4.19 15 20 S 0.25 5.78 23.01 -56.49 -1.30 4.48 15 21 H 0.07 0.59 8.11 -2.39 -0.02 0.57 15 22 H 0.10 0.53 8.14 -2.39 -0.02 0.51 15 23 H 0.10 0.51 8.14 -2.38 -0.02 0.49 15 24 H 0.18 1.43 8.06 -2.91 -0.02 1.40 15 25 H 0.17 2.83 8.06 -2.91 -0.02 2.81 15 26 H 0.03 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.03 2.06 8.14 -2.39 -0.02 2.04 15 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 Total: -1.00 -72.06 274.19 2.83 -69.23 By element: Atomic # 1 Polarization: -8.49 SS G_CDS: 1.18 Total: -7.31 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.08 Total: -14.47 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.93 Total: -103.49 kcal Atomic # 8 Polarization: 3.42 SS G_CDS: 0.77 Total: 4.19 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.30 Total: 4.48 kcal Total: -72.06 2.83 -69.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952625.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.882 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds