Wall clock time and date at job start Mon Mar 30 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35645 * 117.00263 * 2 1 4 4 C 1.37625 * 122.63188 * 90.02413 * 3 2 1 5 5 C 1.39654 * 124.84700 * 359.95341 * 4 3 2 6 6 H 1.08007 * 120.00267 * 353.14615 * 5 4 3 7 7 C 1.40055 * 120.00297 * 173.14847 * 5 4 3 8 8 N 1.30908 * 119.99472 * 6.49844 * 7 5 4 9 9 Si 1.86800 * 120.00381 * 186.50194 * 7 5 4 10 10 H 1.48498 * 109.46918 * 94.98646 * 9 7 5 11 11 H 1.48499 * 109.46996 * 214.98588 * 9 7 5 12 12 H 1.48498 * 109.47058 * 334.98316 * 9 7 5 13 13 S 1.75416 * 110.30438 * 180.22258 * 4 3 2 14 14 C 1.76006 * 91.91771 * 359.67905 * 13 4 3 15 15 C 1.39623 * 129.98275 * 180.02562 * 14 13 4 16 16 C 1.37643 * 120.54105 * 180.29381 * 15 14 13 17 17 C 1.39310 * 120.15261 * 359.97438 * 16 15 14 18 18 O 1.35994 * 119.83574 * 179.97438 * 17 16 15 19 19 C 1.37416 * 120.32998 * 0.02562 * 17 16 15 20 20 C 1.40066 * 110.11310 * 0.32069 * 14 13 4 21 21 H 1.08995 * 109.47328 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47084 * 300.00560 * 1 2 3 23 23 H 1.09004 * 109.47037 * 59.99593 * 1 2 3 24 24 H 0.97006 * 119.99604 * 180.02562 * 8 7 5 25 25 H 1.07996 * 119.73472 * 0.30990 * 15 14 13 26 26 H 1.08001 * 119.92158 * 179.97438 * 16 15 14 27 27 H 0.96702 * 114.00192 * 89.99132 * 18 17 16 28 28 H 1.08005 * 119.82510 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.3822 1.8696 1.1590 5 6 2.1390 1.3932 2.4491 6 1 1.5555 0.4956 2.5922 7 6 2.6516 2.0792 3.5572 8 7 3.2488 3.2327 3.3940 9 14 2.4834 1.3484 5.2681 10 1 3.7178 0.5964 5.6086 11 1 2.2805 2.4395 6.2547 12 1 1.3183 0.4283 5.3009 13 16 3.1545 3.3994 0.7845 14 6 3.0159 3.1132 -0.9466 15 6 3.4198 3.9064 -2.0223 16 6 3.2073 3.4901 -3.3169 17 6 2.5855 2.2686 -3.5660 18 8 2.3784 1.8638 -4.8477 19 6 2.1795 1.4711 -2.5232 20 6 2.3886 1.8833 -1.1827 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 3.6042 3.7077 4.1615 25 1 3.9031 4.8543 -1.8371 26 1 3.5234 4.1118 -4.1415 27 1 3.1058 1.3462 -5.2192 28 1 1.6986 0.5255 -2.7257 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:00 Heat of formation + Delta-G solvation = -82.817823 kcal Electronic energy + Delta-G solvation = -15629.689323 eV Core-core repulsion = 12928.756083 eV Total energy + Delta-G solvation = -2700.933240 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56317 -39.13008 -37.27542 -36.33769 -33.81522 -31.25334 -30.30986 -28.13405 -26.66445 -23.85532 -23.24746 -21.25321 -19.87544 -18.92293 -17.92670 -17.61851 -16.67881 -16.17294 -16.11770 -16.00678 -15.35557 -15.10304 -14.48100 -14.15999 -13.83693 -13.64236 -13.24366 -13.09872 -13.04635 -12.53559 -12.09421 -12.03554 -11.84880 -11.40369 -11.17385 -10.92500 -10.39115 -10.11103 -9.28795 -9.00189 -8.18697 -6.57729 0.22061 0.49275 1.20985 1.31084 1.34069 1.52465 1.69573 1.80617 2.10732 2.74041 2.94135 3.44498 3.69427 4.12197 4.34224 4.52466 4.65868 4.70638 4.75140 4.81117 4.85427 5.03551 5.30598 5.38000 5.58564 5.67022 5.72404 5.94044 6.06282 6.19119 6.48076 6.97381 7.20341 7.86422 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032994 B = 0.007645 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.425846 B = 3661.598526 C = 4426.132422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.318 6.318 3 C -0.201 4.201 4 C 0.006 3.994 5 C -0.384 4.384 6 H 0.098 0.902 7 C 0.018 3.982 8 N -0.786 5.786 9 Si 1.013 2.987 10 H -0.257 1.257 11 H -0.254 1.254 12 H -0.255 1.255 13 S 0.154 5.846 14 C -0.287 4.287 15 C -0.043 4.043 16 C -0.204 4.204 17 C 0.118 3.882 18 O -0.508 6.508 19 C -0.189 4.189 20 C -0.006 4.006 21 H 0.102 0.898 22 H 0.026 0.974 23 H 0.023 0.977 24 H 0.317 0.683 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.404 0.596 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 0.270 -1.405 1.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.235 6.235 3 C -0.251 4.251 4 C -0.114 4.114 5 C -0.417 4.417 6 H 0.116 0.884 7 C -0.202 4.202 8 N -0.412 5.412 9 Si 0.830 3.170 10 H -0.181 1.181 11 H -0.178 1.178 12 H -0.179 1.179 13 S 0.413 5.587 14 C -0.401 4.401 15 C -0.065 4.065 16 C -0.224 4.224 17 C 0.071 3.929 18 O -0.320 6.320 19 C -0.209 4.209 20 C -0.013 4.013 21 H 0.120 0.880 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.130 0.870 25 H 0.154 0.846 26 H 0.165 0.835 27 H 0.262 0.738 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.874 1.724 -0.379 1.970 hybrid contribution -0.544 -1.574 -0.414 1.716 sum 0.330 0.150 -0.793 0.872 Atomic orbital electron populations 1.23022 0.83262 1.02175 0.98667 1.86000 1.18255 1.25299 1.93932 1.17355 1.22095 0.95690 0.89909 1.22012 0.96792 0.95797 0.96847 1.19525 1.24674 1.08334 0.89211 0.88394 1.27316 0.91786 0.94147 1.06973 1.68720 1.23911 1.11820 1.36748 0.84678 0.80392 0.79092 0.72792 1.18116 1.17760 1.17889 1.84444 1.65124 1.18175 0.90987 1.23624 1.13164 1.00590 1.02722 1.20439 0.97487 0.98169 0.90386 1.21096 1.06427 0.98172 0.96717 1.18032 0.98090 0.93546 0.83192 1.84732 1.47908 1.74918 1.24451 1.21001 1.07989 1.00892 0.91036 1.18133 0.96601 0.93346 0.93264 0.87973 0.95518 0.95869 0.86957 0.84601 0.83471 0.73771 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 1.00 11.13 113.37 1.26 2.26 15 2 O -0.32 -16.20 10.08 -89.60 -0.90 -17.10 15 3 C -0.20 -10.78 5.87 22.66 0.13 -10.65 15 4 C 0.01 0.30 6.11 22.47 0.14 0.44 15 5 C -0.38 -19.36 9.07 23.05 0.21 -19.15 15 6 H 0.10 4.86 7.74 -2.91 -0.02 4.84 15 7 C 0.02 0.80 5.49 85.27 0.47 1.27 15 8 N -0.79 -35.28 10.62 21.86 0.23 -35.05 15 9 Si 1.01 33.11 29.57 68.60 2.03 35.14 15 10 H -0.26 -8.18 7.11 99.48 0.71 -7.47 15 11 H -0.25 -7.61 7.11 99.48 0.71 -6.90 15 12 H -0.26 -8.30 7.11 99.48 0.71 -7.60 15 13 S 0.15 7.52 20.14 -56.49 -1.14 6.38 15 14 C -0.29 -13.72 6.45 23.05 0.15 -13.57 15 15 C -0.04 -1.71 10.05 22.46 0.23 -1.48 15 16 C -0.20 -7.46 9.98 22.39 0.22 -7.23 15 17 C 0.12 4.61 6.67 22.33 0.15 4.76 15 18 O -0.51 -16.34 13.49 -93.48 -1.26 -17.60 15 19 C -0.19 -8.61 9.93 22.95 0.23 -8.38 15 20 C -0.01 -0.29 5.86 -21.42 -0.13 -0.42 15 21 H 0.10 3.42 8.14 -2.39 -0.02 3.40 15 22 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 23 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 24 H 0.32 12.33 8.30 -92.70 -0.77 11.56 15 25 H 0.14 4.60 8.06 -2.91 -0.02 4.58 15 26 H 0.15 4.32 8.06 -2.91 -0.02 4.30 15 27 H 0.40 8.58 9.06 -74.06 -0.67 7.91 15 28 H 0.11 4.75 8.06 -2.91 -0.02 4.73 15 Total: -1.00 -61.58 265.53 2.55 -59.04 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.53 Total: 21.36 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 3.06 Total: -52.16 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.23 Total: -35.05 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -2.16 Total: -34.71 kcal Atomic # 14 Polarization: 33.11 SS G_CDS: 2.03 Total: 35.14 kcal Atomic # 16 Polarization: 7.52 SS G_CDS: -1.14 Total: 6.38 kcal Total: -61.58 2.55 -59.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.781 kcal (2) G-P(sol) polarization free energy of solvation -61.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds