Wall clock time and date at job start Mon Mar 30 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46991 * 2 1 4 4 N 1.30370 * 124.94930 * 89.97866 * 3 2 1 5 5 C 1.35040 * 109.84103 * 180.02562 * 4 3 2 6 6 C 1.40293 * 126.60324 * 179.97438 * 5 4 3 7 7 H 1.07996 * 119.99814 * 179.97438 * 6 5 4 8 8 C 1.39568 * 119.99959 * 359.97438 * 6 5 4 9 9 N 1.31187 * 119.99732 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46865 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46778 * 120.00062 * 10 8 6 13 13 H 1.48494 * 109.47116 * 240.00498 * 10 8 6 14 14 C 1.41505 * 106.79738 * 359.97438 * 5 4 3 15 15 C 1.39250 * 133.62064 * 180.29168 * 14 5 4 16 16 C 1.38201 * 119.12382 * 180.09793 * 15 14 5 17 17 Cl 1.73602 * 120.30595 * 179.80778 * 16 15 14 18 18 C 1.40278 * 119.38644 * 359.58754 * 16 15 14 19 19 C 1.35258 * 120.36813 * 0.22042 * 18 16 15 20 20 N 1.36399 * 124.95230 * 269.97135 * 3 2 1 21 21 H 1.08993 * 109.47003 * 60.00117 * 1 2 3 22 22 H 1.08999 * 109.46533 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47032 * 299.99676 * 1 2 3 24 24 H 1.08996 * 109.47621 * 239.99882 * 2 1 3 25 25 H 1.09005 * 109.47291 * 119.99770 * 2 1 3 26 26 H 0.97006 * 120.00022 * 180.02562 * 9 8 6 27 27 H 1.07997 * 120.43550 * 359.97438 * 15 14 5 28 28 H 1.07995 * 119.81260 * 180.19801 * 18 16 15 29 29 H 1.08001 * 119.65143 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2808 2.1251 1.0686 5 6 2.7150 3.3545 0.7166 6 6 3.0811 4.3930 1.5859 7 1 3.4156 5.3389 1.1864 8 6 3.0129 4.2037 2.9670 9 7 2.6069 3.0544 3.4522 10 14 3.4996 5.5867 4.1245 11 1 3.9176 6.7711 3.3323 12 1 2.3403 5.9476 4.9795 13 1 4.6272 5.1409 4.9817 14 6 2.7296 3.3935 -0.6978 15 6 3.0797 4.3685 -1.6283 16 6 2.9748 4.0807 -2.9760 17 17 3.3984 5.2751 -4.1624 18 6 2.5274 2.8128 -3.3762 19 6 2.1971 1.8813 -2.4529 20 7 2.2933 2.1574 -1.1180 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5591 2.9229 4.4122 27 1 3.4267 5.3375 -1.3012 28 1 2.4459 2.5794 -4.4275 29 1 1.8535 0.9090 -2.7740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261006864.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:27 Heat of formation + Delta-G solvation = 58.507775 kcal Electronic energy + Delta-G solvation = -15670.377348 eV Core-core repulsion = 13005.821491 eV Total energy + Delta-G solvation = -2664.555857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.07698 -36.52946 -35.28646 -34.10078 -32.70330 -31.31851 -29.45692 -27.91521 -25.03462 -23.17853 -22.47958 -20.63978 -19.65014 -17.45204 -15.95523 -15.67824 -15.09205 -14.80105 -14.53979 -14.06427 -13.52836 -13.13989 -12.95905 -12.24047 -11.86457 -11.71344 -11.52996 -11.37591 -11.17676 -10.95776 -10.76816 -10.54746 -10.38754 -10.27002 -10.09654 -9.42292 -8.93864 -8.48254 -8.00371 -6.69903 -6.61502 -4.20481 1.81045 2.31221 3.00449 3.06175 3.10694 3.11366 3.86459 3.96454 4.25666 4.33760 5.21116 5.36301 5.39773 5.47348 5.77874 5.79657 5.93618 5.99456 6.15241 6.22525 6.44021 6.58156 6.66962 6.73463 6.93197 7.05371 7.14689 7.34940 7.75854 8.09949 8.50709 8.56679 8.85121 9.60741 10.19710 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.008785 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.626518 B = 3186.437862 C = 4728.864517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C 0.193 3.807 4 N -0.455 5.455 5 C 0.230 3.770 6 C -0.404 4.404 7 H 0.088 0.912 8 C 0.067 3.933 9 N -0.735 5.735 10 Si 0.914 3.086 11 H -0.259 1.259 12 H -0.272 1.272 13 H -0.272 1.272 14 C -0.147 4.147 15 C 0.032 3.968 16 C -0.187 4.187 17 Cl -0.111 7.111 18 C -0.108 4.108 19 C 0.011 3.989 20 N -0.398 5.398 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.277 0.723 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -2.408 -5.594 6.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.063 4.063 4 N -0.177 5.177 5 C 0.103 3.897 6 C -0.438 4.438 7 H 0.107 0.893 8 C -0.157 4.157 9 N -0.357 5.357 10 Si 0.739 3.261 11 H -0.183 1.183 12 H -0.198 1.198 13 H -0.198 1.198 14 C -0.246 4.246 15 C 0.011 3.989 16 C -0.215 4.215 17 Cl -0.083 7.083 18 C -0.132 4.132 19 C -0.107 4.107 20 N -0.081 5.081 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.485 -2.810 -4.728 5.697 hybrid contribution 0.346 0.954 -0.565 1.161 sum -1.139 -1.856 -5.293 5.723 Atomic orbital electron populations 1.21701 0.94877 1.01009 1.02460 1.19787 0.95698 0.88790 1.02680 1.23586 1.05798 0.96238 0.80716 1.70926 1.19564 1.04118 1.23100 1.18417 0.93712 0.91284 0.86305 1.18706 1.36848 0.98133 0.90088 0.89342 1.25992 0.93886 0.96666 0.99186 1.70171 1.29131 1.22223 1.14218 0.86143 0.78931 0.81177 0.79898 1.18263 1.19766 1.19760 1.18976 1.22540 0.88095 0.95001 1.20144 0.92198 0.97088 0.89426 1.19915 1.21337 0.91916 0.88343 1.98238 1.93048 1.58139 1.58850 1.19988 1.02802 0.92152 0.98223 1.20811 1.08063 0.99822 0.81958 1.42181 1.48913 1.12719 1.04267 0.93273 0.92626 0.91787 0.91769 0.89316 0.91237 0.85496 0.85738 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 37.16 0.37 -1.78 15 2 C -0.03 -0.52 6.37 -27.88 -0.18 -0.70 15 3 C 0.19 4.38 7.19 -154.27 -1.11 3.27 15 4 N -0.46 -12.02 9.41 -7.87 -0.07 -12.10 15 5 C 0.23 6.18 6.71 -84.44 -0.57 5.62 15 6 C -0.40 -10.53 9.33 -38.31 -0.36 -10.89 15 7 H 0.09 2.15 7.84 -52.49 -0.41 1.74 15 8 C 0.07 1.65 5.49 -17.33 -0.10 1.55 15 9 N -0.73 -19.03 11.94 55.53 0.66 -18.37 15 10 Si 0.91 18.18 29.56 -169.99 -5.02 13.16 15 11 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 12 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 14 C -0.15 -3.63 6.78 -83.63 -0.57 -4.20 15 15 C 0.03 0.71 9.91 -39.22 -0.39 0.32 15 16 C -0.19 -3.74 6.39 -38.83 -0.25 -3.99 15 17 Cl -0.11 -1.93 28.99 -51.86 -1.50 -3.44 15 18 C -0.11 -1.99 9.79 -39.88 -0.39 -2.38 15 19 C 0.01 0.21 10.76 -16.46 -0.18 0.03 15 20 N -0.40 -8.94 2.95 -57.53 -0.17 -9.11 15 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.06 0.94 7.95 -51.93 -0.41 0.52 15 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.28 6.48 8.30 -40.82 -0.34 6.14 15 27 H 0.13 2.64 8.06 -52.49 -0.42 2.22 15 28 H 0.12 1.92 8.06 -52.49 -0.42 1.49 15 29 H 0.14 2.11 7.91 -52.49 -0.42 1.69 15 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -28.70 273.49 -8.61 -37.31 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -2.91 Total: 1.57 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.71 Total: -13.15 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.42 Total: -39.57 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.16 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -1.50 Total: -3.44 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.70 -8.61 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006864.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.816 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds