Wall clock time and date at job start Mon Mar 30 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46991 * 2 1 4 4 N 1.30370 * 124.94930 * 89.97866 * 3 2 1 5 5 C 1.35040 * 109.84103 * 180.02562 * 4 3 2 6 6 C 1.40293 * 126.60324 * 179.97438 * 5 4 3 7 7 H 1.07996 * 119.99814 * 179.97438 * 6 5 4 8 8 C 1.39568 * 119.99959 * 359.97438 * 6 5 4 9 9 N 1.31187 * 119.99732 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46865 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46778 * 120.00062 * 10 8 6 13 13 H 1.48494 * 109.47116 * 240.00498 * 10 8 6 14 14 C 1.41505 * 106.79738 * 359.97438 * 5 4 3 15 15 C 1.39250 * 133.62064 * 180.29168 * 14 5 4 16 16 C 1.38201 * 119.12382 * 180.09793 * 15 14 5 17 17 Cl 1.73602 * 120.30595 * 179.80778 * 16 15 14 18 18 C 1.40278 * 119.38644 * 359.58754 * 16 15 14 19 19 C 1.35258 * 120.36813 * 0.22042 * 18 16 15 20 20 N 1.36399 * 124.95230 * 269.97135 * 3 2 1 21 21 H 1.08993 * 109.47003 * 60.00117 * 1 2 3 22 22 H 1.08999 * 109.46533 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47032 * 299.99676 * 1 2 3 24 24 H 1.08996 * 109.47621 * 239.99882 * 2 1 3 25 25 H 1.09005 * 109.47291 * 119.99770 * 2 1 3 26 26 H 0.97006 * 120.00022 * 180.02562 * 9 8 6 27 27 H 1.07997 * 120.43550 * 359.97438 * 15 14 5 28 28 H 1.07995 * 119.81260 * 180.19801 * 18 16 15 29 29 H 1.08001 * 119.65143 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2808 2.1251 1.0686 5 6 2.7150 3.3545 0.7166 6 6 3.0811 4.3930 1.5859 7 1 3.4156 5.3389 1.1864 8 6 3.0129 4.2037 2.9670 9 7 2.6069 3.0544 3.4522 10 14 3.4996 5.5867 4.1245 11 1 3.9176 6.7711 3.3323 12 1 2.3403 5.9476 4.9795 13 1 4.6272 5.1409 4.9817 14 6 2.7296 3.3935 -0.6978 15 6 3.0797 4.3685 -1.6283 16 6 2.9748 4.0807 -2.9760 17 17 3.3984 5.2751 -4.1624 18 6 2.5274 2.8128 -3.3762 19 6 2.1971 1.8813 -2.4529 20 7 2.2933 2.1574 -1.1180 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5591 2.9229 4.4122 27 1 3.4267 5.3375 -1.3012 28 1 2.4459 2.5794 -4.4275 29 1 1.8535 0.9090 -2.7740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006864.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:27 Heat of formation + Delta-G solvation = 43.711804 kcal Electronic energy + Delta-G solvation = -15671.018949 eV Core-core repulsion = 13005.821491 eV Total energy + Delta-G solvation = -2665.197458 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.80862 -38.17909 -36.90271 -35.75471 -34.26278 -32.95838 -31.12008 -29.67265 -26.67851 -24.68857 -24.10885 -22.39868 -21.27026 -19.21129 -17.61434 -17.37048 -16.73127 -16.41069 -16.24046 -15.56917 -15.01334 -14.63850 -14.54834 -13.74297 -13.44009 -13.21157 -13.04541 -12.94454 -12.75372 -12.59793 -12.21499 -12.08203 -11.95044 -11.83289 -11.66315 -11.09739 -10.67033 -10.30385 -9.71250 -8.46276 -8.38213 -6.04292 0.15136 0.65183 1.41569 1.43332 1.46571 1.57029 2.22558 2.31609 2.47342 2.68325 3.54967 3.76479 3.90073 4.14469 4.27698 4.41347 4.47632 4.55905 4.64950 4.98021 5.00797 5.08028 5.13894 5.22128 5.35732 5.36581 5.45965 5.62949 6.01082 6.26612 6.75430 6.79748 7.10044 7.83170 8.47263 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.008785 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.626518 B = 3186.437862 C = 4728.864517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.027 4.027 3 C 0.174 3.826 4 N -0.493 5.493 5 C 0.186 3.814 6 C -0.452 4.452 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.784 5.784 10 Si 0.989 3.011 11 H -0.255 1.255 12 H -0.267 1.267 13 H -0.266 1.266 14 C -0.170 4.170 15 C -0.004 4.004 16 C -0.153 4.153 17 Cl -0.081 7.081 18 C -0.123 4.123 19 C 0.023 3.977 20 N -0.397 5.397 21 H 0.050 0.950 22 H 0.094 0.906 23 H 0.034 0.966 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.280 0.720 27 H 0.127 0.873 28 H 0.167 0.833 29 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -3.157 -8.328 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 C -0.083 4.083 4 N -0.214 5.214 5 C 0.058 3.942 6 C -0.486 4.486 7 H 0.104 0.896 8 C -0.194 4.194 9 N -0.409 5.409 10 Si 0.810 3.190 11 H -0.179 1.179 12 H -0.192 1.192 13 H -0.191 1.191 14 C -0.270 4.270 15 C -0.024 4.024 16 C -0.181 4.181 17 Cl -0.053 7.053 18 C -0.145 4.145 19 C -0.094 4.094 20 N -0.077 5.077 21 H 0.069 0.931 22 H 0.112 0.888 23 H 0.053 0.947 24 H 0.117 0.883 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.145 0.855 28 H 0.185 0.815 29 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.754 -3.572 -7.488 8.480 hybrid contribution 0.417 1.147 -0.198 1.236 sum -1.337 -2.426 -7.686 8.170 Atomic orbital electron populations 1.21638 0.93327 1.03059 1.01082 1.19993 0.96850 0.85592 1.04133 1.24472 1.05798 0.98002 0.80027 1.70788 1.20386 1.04692 1.25582 1.18824 0.95543 0.92021 0.87836 1.18915 1.39822 0.98506 0.91323 0.89565 1.26834 0.93283 0.99033 1.00224 1.70264 1.31722 1.24357 1.14555 0.85048 0.78639 0.77906 0.77456 1.17852 1.19157 1.19126 1.19181 1.23350 0.89643 0.94845 1.20238 0.94697 0.97205 0.90294 1.20368 1.16526 0.92961 0.88243 1.98262 1.92612 1.57165 1.57228 1.20508 1.02591 0.91091 1.00360 1.21746 1.05502 1.01883 0.80284 1.42471 1.47582 1.11936 1.05752 0.93088 0.88765 0.94702 0.88322 0.89728 0.90982 0.85521 0.81545 0.79594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.89 71.98 0.71 -3.04 15 2 C -0.03 -0.87 6.37 29.85 0.19 -0.68 15 3 C 0.17 7.89 7.19 137.73 0.99 8.88 15 4 N -0.49 -27.30 9.41 -178.83 -1.68 -28.99 15 5 C 0.19 10.54 6.71 39.96 0.27 10.81 15 6 C -0.45 -25.17 9.33 23.09 0.22 -24.95 15 7 H 0.09 4.54 7.84 -2.91 -0.02 4.51 15 8 C 0.02 1.30 5.49 85.11 0.47 1.76 15 9 N -0.78 -43.24 11.94 21.78 0.26 -42.98 15 10 Si 0.99 39.23 29.56 68.60 2.03 41.26 15 11 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 12 H -0.27 -10.17 7.11 99.48 0.71 -9.47 15 13 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 14 C -0.17 -8.54 6.78 39.28 0.27 -8.28 15 15 C 0.00 -0.16 9.91 22.50 0.22 0.07 15 16 C -0.15 -5.70 6.39 22.76 0.15 -5.55 15 17 Cl -0.08 -2.57 28.99 -2.72 -0.08 -2.64 15 18 C -0.12 -3.98 9.79 22.08 0.22 -3.76 15 19 C 0.02 0.79 10.76 83.25 0.90 1.68 15 20 N -0.40 -17.41 2.95 -335.93 -0.99 -18.41 15 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.10 2.49 7.95 -2.39 -0.02 2.47 15 25 H 0.08 2.81 8.14 -2.38 -0.02 2.79 15 26 H 0.28 13.95 8.30 -92.70 -0.77 13.18 15 27 H 0.13 5.43 8.06 -2.91 -0.02 5.40 15 28 H 0.17 4.06 8.06 -2.91 -0.02 4.04 15 29 H 0.19 4.49 7.91 -2.91 -0.02 4.47 15 Total: -1.00 -66.75 273.49 5.29 -61.46 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.16 Total: 13.35 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 4.59 Total: -23.06 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -2.41 Total: -90.37 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.64 kcal Total: -66.75 5.29 -61.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006864.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.170 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds