Wall clock time and date at job start Mon Mar 30 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99835 * 2 1 4 4 H 1.48501 * 109.47249 * 90.00097 * 3 2 1 5 5 H 1.48503 * 109.47040 * 210.00038 * 3 2 1 6 6 H 1.48500 * 109.47175 * 329.99801 * 3 2 1 7 7 C 1.37874 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00024 * 178.70187 * 7 2 1 9 9 C 1.50696 * 120.00267 * 358.69920 * 7 2 1 10 10 H 1.08997 * 109.47408 * 324.68012 * 9 7 2 11 11 N 1.46899 * 109.46946 * 84.67757 * 9 7 2 12 12 C 1.50703 * 109.47526 * 204.67645 * 9 7 2 13 13 C 1.34227 * 126.50632 * 264.68827 * 12 9 7 14 14 N 1.36848 * 109.92071 * 179.89164 * 13 12 9 15 15 H 0.97004 * 125.06453 * 180.16027 * 14 13 12 16 16 C 1.37705 * 109.87562 * 0.38388 * 14 13 12 17 17 C 1.39140 * 133.41918 * 179.77734 * 16 14 13 18 18 C 1.37712 * 119.94266 * 180.02562 * 17 16 14 19 19 C 1.38840 * 120.68551 * 359.97438 * 18 17 16 20 20 C 1.37719 * 120.36942 * 359.97155 * 19 18 17 21 21 Cl 1.73602 * 120.18423 * 180.02562 * 20 19 18 22 22 C 1.39737 * 119.62947 * 0.06496 * 20 19 18 23 23 H 0.97004 * 119.99659 * 180.11046 * 1 2 3 24 24 H 1.00902 * 111.00548 * 302.45598 * 11 9 7 25 25 H 1.00898 * 111.00445 * 66.41519 * 11 9 7 26 26 H 1.08008 * 125.03450 * 0.03427 * 13 12 9 27 27 H 1.07994 * 120.02679 * 359.97386 * 17 16 14 28 28 H 1.08000 * 119.65648 * 179.97438 * 18 17 16 29 29 H 1.08001 * 119.81580 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 -0.0207 9 6 1.2514 -2.4989 0.0307 10 1 0.3554 -2.3873 0.6413 11 7 0.8684 -2.8749 -1.3367 12 6 2.1299 -3.5726 0.6195 13 6 2.8911 -4.4438 -0.0612 14 7 3.5505 -5.2672 0.8106 15 1 4.1610 -5.9761 0.5542 16 6 3.2145 -4.9427 2.1061 17 6 3.5851 -5.4526 3.3465 18 6 3.0662 -4.9040 4.4981 19 6 2.1733 -3.8424 4.4373 20 6 1.7933 -3.3210 3.2206 21 17 0.6772 -1.9932 3.1502 22 6 2.3105 -3.8673 2.0430 23 1 -0.4850 -0.8401 0.0016 24 1 0.3115 -2.1524 -1.7679 25 1 1.6818 -3.0862 -1.8950 26 1 2.9729 -4.4870 -1.1373 27 1 4.2785 -6.2784 3.4061 28 1 3.3567 -5.3036 5.4584 29 1 1.7753 -3.4226 5.3493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021872.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:56 Heat of formation + Delta-G solvation = 22.654203 kcal Electronic energy + Delta-G solvation = -15929.224876 eV Core-core repulsion = 13263.114291 eV Total energy + Delta-G solvation = -2666.110585 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.10746 -38.12643 -37.20444 -36.51808 -33.48851 -32.05486 -30.35364 -29.30266 -27.28482 -24.32762 -23.73957 -22.77714 -20.37403 -19.09707 -18.45549 -17.43835 -16.56206 -15.99485 -15.67476 -15.51065 -15.30449 -15.18270 -14.58262 -14.47428 -13.75355 -13.44901 -13.30849 -12.78141 -12.65309 -12.23327 -12.01077 -11.93125 -11.77678 -11.37141 -11.25257 -10.58506 -10.24624 -9.20190 -9.16921 -8.60418 -8.19392 -6.20479 0.09428 0.62378 1.46457 1.50456 1.56865 1.73881 1.90448 2.30685 2.59149 2.86984 3.30131 3.90917 4.02403 4.15890 4.30979 4.43089 4.44314 4.72049 4.87005 4.95601 5.03279 5.37270 5.47956 5.56520 5.74199 5.93913 6.03887 6.18508 6.24397 6.68306 6.74774 6.85103 6.96871 7.57308 8.88249 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.009427 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.218715 B = 2969.576776 C = 3549.391775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 1.097 2.903 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.605 4.605 8 H 0.024 0.976 9 C 0.256 3.744 10 H 0.032 0.968 11 N -0.845 5.845 12 C -0.146 4.146 13 C 0.038 3.962 14 N -0.580 5.580 15 H 0.432 0.568 16 C 0.095 3.905 17 C -0.126 4.126 18 C -0.088 4.088 19 C -0.154 4.154 20 C -0.013 4.013 21 Cl -0.079 7.079 22 C -0.136 4.136 23 H 0.260 0.740 24 H 0.326 0.674 25 H 0.325 0.675 26 H 0.185 0.815 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 -11.719 5.996 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.922 3.078 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.645 4.645 8 H 0.043 0.957 9 C 0.146 3.854 10 H 0.049 0.951 11 N -0.371 5.371 12 C -0.153 4.153 13 C -0.087 4.087 14 N -0.185 5.185 15 H 0.273 0.727 16 C -0.014 4.014 17 C -0.146 4.146 18 C -0.107 4.107 19 C -0.174 4.174 20 C -0.040 4.040 21 Cl -0.050 7.050 22 C -0.142 4.142 23 H 0.071 0.929 24 H 0.136 0.864 25 H 0.136 0.864 26 H 0.202 0.798 27 H 0.179 0.821 28 H 0.191 0.809 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.875 -10.686 6.234 14.665 hybrid contribution 0.526 -0.498 -0.575 0.925 sum 8.402 -11.184 5.659 15.089 Atomic orbital electron populations 1.70871 1.07360 1.30113 1.48113 1.26661 0.96504 1.04864 0.92745 0.83176 0.74486 0.73042 0.77075 1.21136 1.20217 1.20835 1.22562 0.93324 0.93510 1.55097 0.95730 1.17426 0.92483 0.88666 0.86845 0.95055 1.59555 1.24725 1.47755 1.05071 1.20723 1.03548 1.00009 0.91053 1.21611 0.97286 0.93681 0.96116 1.41506 1.41732 1.32468 1.02824 0.72744 1.18439 0.98699 0.96893 0.87327 1.20469 1.03479 1.02717 0.87960 1.21122 0.95536 0.94721 0.99289 1.21080 1.01597 0.99618 0.95093 1.20823 0.96357 0.92290 0.94575 1.98396 1.61237 1.46676 1.98705 1.19198 1.02362 0.99625 0.93002 0.92932 0.86401 0.86429 0.79778 0.82059 0.80922 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.07 13.63 21.45 0.29 -54.77 15 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 15 3 Si 1.10 51.55 29.90 68.60 2.05 53.60 15 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 15 7 C -0.60 -33.44 8.57 25.60 0.22 -33.23 15 8 H 0.02 1.41 7.81 -2.91 -0.02 1.39 15 9 C 0.26 12.97 2.28 43.42 0.10 13.07 15 10 H 0.03 1.80 5.34 -2.39 -0.01 1.79 15 11 N -0.84 -38.56 9.09 -174.96 -1.59 -40.15 15 12 C -0.15 -6.55 5.42 -18.63 -0.10 -6.65 15 13 C 0.04 1.34 11.08 82.99 0.92 2.26 15 14 N -0.58 -16.37 6.07 -187.60 -1.14 -17.51 15 15 H 0.43 8.03 8.96 -92.71 -0.83 7.20 15 16 C 0.10 3.10 7.27 39.02 0.28 3.38 15 17 C -0.13 -3.07 10.07 22.36 0.23 -2.84 15 18 C -0.09 -2.08 10.01 22.29 0.22 -1.85 15 19 C -0.15 -4.78 9.81 22.29 0.22 -4.56 15 20 C -0.01 -0.54 6.35 22.51 0.14 -0.40 15 21 Cl -0.08 -3.62 26.87 -2.72 -0.07 -3.69 15 22 C -0.14 -5.69 6.21 -20.18 -0.13 -5.82 15 23 H 0.26 15.78 6.52 -92.71 -0.60 15.18 15 24 H 0.33 15.75 8.80 -89.69 -0.79 14.96 15 25 H 0.32 13.24 7.67 -89.70 -0.69 12.55 15 26 H 0.19 5.53 7.13 -2.91 -0.02 5.51 15 27 H 0.16 2.52 8.06 -2.91 -0.02 2.50 15 28 H 0.17 2.51 8.06 -2.91 -0.02 2.49 15 29 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -69.25 265.80 1.19 -68.06 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.92 Total: 31.00 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 2.57 Total: -36.54 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -2.44 Total: -112.43 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Atomic # 17 Polarization: -3.62 SS G_CDS: -0.07 Total: -3.69 kcal Total: -69.25 1.19 -68.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021872.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.717 kcal (2) G-P(sol) polarization free energy of solvation -69.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds