Wall clock time and date at job start Mon Mar 30 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46898 * 109.47515 * 300.28298 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.34229 * 126.50275 * 100.02519 * 12 9 7 14 14 N 1.36848 * 109.91961 * 179.97438 * 13 12 9 15 15 H 0.96999 * 125.06142 * 180.02562 * 14 13 12 16 16 C 1.37707 * 109.87688 * 0.02562 * 14 13 12 17 17 C 1.39139 * 133.41783 * 180.02562 * 16 14 13 18 18 C 1.37712 * 119.94350 * 179.97438 * 17 16 14 19 19 C 1.38843 * 120.68526 * 359.97438 * 18 17 16 20 20 C 1.37722 * 120.36661 * 0.02562 * 19 18 17 21 21 Cl 1.73605 * 120.18385 * 180.02562 * 20 19 18 22 22 C 1.39740 * 119.62931 * 359.72075 * 20 19 18 23 23 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99361 * 299.99455 * 11 9 7 25 25 H 1.00897 * 111.00235 * 63.94995 * 11 9 7 26 26 H 1.07999 * 125.03645 * 359.96328 * 13 12 9 27 27 H 1.07992 * 120.02868 * 359.97413 * 17 16 14 28 28 H 1.08000 * 119.66453 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.81883 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8786 -0.6819 0.8837 11 7 3.9962 -0.4990 -1.2058 12 6 4.0139 -2.6148 -0.0107 13 6 4.4527 -3.3029 -1.0764 14 7 4.8280 -4.5626 -0.6958 15 1 5.1783 -5.2435 -1.2912 16 6 4.6343 -4.7197 0.6585 17 6 4.8463 -5.7763 1.5387 18 6 4.5483 -5.6281 2.8750 19 6 4.0368 -4.4313 3.3584 20 6 3.8189 -3.3722 2.5054 21 17 3.1798 -1.8776 3.1150 22 6 4.1212 -3.5052 1.1476 23 1 -0.4850 0.8400 -0.0004 24 1 3.6692 -0.9550 -2.0445 25 1 3.7268 0.4733 -1.1943 26 1 4.5021 -2.9192 -2.0848 27 1 5.2441 -6.7118 1.1742 28 1 4.7143 -6.4513 3.5541 29 1 3.8085 -4.3302 4.4091 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021878.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:57 Heat of formation + Delta-G solvation = 33.563168 kcal Electronic energy + Delta-G solvation = -15903.672810 eV Core-core repulsion = 13238.035274 eV Total energy + Delta-G solvation = -2665.637536 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.08699 -38.10706 -37.19828 -36.49986 -33.89388 -32.21915 -30.33525 -29.36096 -27.99386 -24.19360 -23.70486 -22.75736 -20.05837 -19.06913 -18.78397 -17.52287 -16.73221 -16.40308 -15.91740 -15.40360 -15.32222 -15.18496 -14.84201 -14.43038 -13.66059 -13.42688 -13.24350 -12.80434 -12.75849 -12.71746 -12.20224 -11.96404 -11.85188 -11.60950 -11.32737 -10.81423 -10.24411 -9.40327 -9.13444 -8.35362 -8.26957 -6.31967 0.12845 0.65828 1.21617 1.32961 1.41017 1.46977 1.92775 2.26472 2.34526 2.89475 3.04260 3.88149 4.02429 4.13240 4.32147 4.35822 4.46939 4.74370 4.89110 4.90107 5.01443 5.33329 5.50090 5.51519 5.59143 5.73334 5.91014 6.10667 6.24273 6.50708 6.69189 6.81422 6.87388 7.32069 8.87730 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.009291 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.390951 B = 3012.876683 C = 3649.686222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.020 3.980 3 Si 0.922 3.078 4 H -0.251 1.251 5 H -0.298 1.298 6 H -0.254 1.254 7 C -0.508 4.508 8 H 0.024 0.976 9 C 0.248 3.752 10 H 0.034 0.966 11 N -0.838 5.838 12 C -0.151 4.151 13 C 0.053 3.947 14 N -0.580 5.580 15 H 0.433 0.567 16 C 0.095 3.905 17 C -0.124 4.124 18 C -0.089 4.089 19 C -0.152 4.152 20 C -0.011 4.011 21 Cl -0.084 7.084 22 C -0.134 4.134 23 H 0.264 0.736 24 H 0.338 0.662 25 H 0.314 0.686 26 H 0.191 0.809 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.271 -11.163 1.423 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.178 4.178 3 Si 0.748 3.252 4 H -0.176 1.176 5 H -0.225 1.225 6 H -0.178 1.178 7 C -0.548 4.548 8 H 0.043 0.957 9 C 0.138 3.862 10 H 0.052 0.948 11 N -0.370 5.370 12 C -0.157 4.157 13 C -0.072 4.072 14 N -0.185 5.185 15 H 0.274 0.726 16 C -0.014 4.014 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.172 4.172 20 C -0.038 4.038 21 Cl -0.055 7.055 22 C -0.140 4.140 23 H 0.073 0.927 24 H 0.150 0.850 25 H 0.130 0.870 26 H 0.208 0.792 27 H 0.179 0.821 28 H 0.190 0.810 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.860 -11.164 1.603 17.105 hybrid contribution -1.412 1.288 -0.295 1.934 sum 11.448 -9.876 1.309 15.176 Atomic orbital electron populations 1.70050 1.07934 1.27637 1.52829 1.25704 0.95310 1.02186 0.94584 0.86203 0.79238 0.79992 0.79745 1.17565 1.22512 1.17828 1.21641 0.91735 0.92340 1.49069 0.95728 1.17598 0.90476 0.88096 0.90063 0.94777 1.59635 1.66267 1.05325 1.05817 1.20368 1.06703 0.96584 0.92088 1.21691 1.01640 0.84178 0.99719 1.41543 1.57520 1.13451 1.05981 0.72626 1.18414 1.02448 0.95255 0.85239 1.20470 1.04367 0.97419 0.92251 1.21117 0.97788 0.96869 0.95060 1.21081 1.03781 0.92437 0.99902 1.20752 1.01446 0.88848 0.92729 1.98368 1.85197 1.34448 1.87477 1.19178 1.06236 0.95961 0.92607 0.92734 0.84960 0.87042 0.79177 0.82103 0.81032 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.31 13.96 21.45 0.30 -59.01 15 2 C 0.02 1.16 5.47 84.65 0.46 1.63 15 3 Si 0.92 44.55 24.61 68.60 1.69 46.24 15 4 H -0.25 -10.99 7.00 99.48 0.70 -10.29 15 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 15 6 H -0.25 -12.02 6.55 99.48 0.65 -11.37 15 7 C -0.51 -29.01 9.05 25.60 0.23 -28.78 15 8 H 0.02 1.61 7.98 -2.91 -0.02 1.58 15 9 C 0.25 12.01 2.02 43.42 0.09 12.10 15 10 H 0.03 1.80 6.02 -2.38 -0.01 1.78 15 11 N -0.84 -35.71 8.84 -174.95 -1.55 -37.26 15 12 C -0.15 -6.46 5.41 -18.63 -0.10 -6.56 15 13 C 0.05 1.78 11.07 82.99 0.92 2.70 15 14 N -0.58 -15.58 6.07 -187.61 -1.14 -16.72 15 15 H 0.43 7.52 8.96 -92.71 -0.83 6.69 15 16 C 0.10 2.98 7.27 39.02 0.28 3.27 15 17 C -0.12 -2.93 10.07 22.36 0.23 -2.71 15 18 C -0.09 -2.05 10.01 22.29 0.22 -1.83 15 19 C -0.15 -4.56 9.81 22.29 0.22 -4.34 15 20 C -0.01 -0.42 6.35 22.51 0.14 -0.27 15 21 Cl -0.08 -3.64 26.79 -2.72 -0.07 -3.71 15 22 C -0.13 -5.40 6.21 -20.18 -0.13 -5.53 15 23 H 0.26 15.61 8.31 -92.71 -0.77 14.84 15 24 H 0.34 13.14 8.00 -89.69 -0.72 12.42 15 25 H 0.31 13.69 4.28 -89.70 -0.38 13.31 15 26 H 0.19 5.30 7.31 -2.91 -0.02 5.28 15 27 H 0.16 2.41 8.06 -2.91 -0.02 2.39 15 28 H 0.17 2.40 8.06 -2.91 -0.02 2.38 15 29 H 0.14 3.67 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -73.02 258.70 1.02 -72.00 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.78 Total: 28.80 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 2.57 Total: -30.34 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -2.39 Total: -112.99 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.69 Total: 46.24 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -0.07 Total: -3.71 kcal Total: -73.02 1.02 -72.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021878.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.563 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds