Wall clock time and date at job start Mon Mar 30 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30375 * 124.94737 * 90.02391 * 3 2 1 5 5 C 1.35040 * 109.82952 * 179.97438 * 4 3 2 6 6 C 1.40272 * 126.60585 * 179.97438 * 5 4 3 7 7 H 1.07996 * 119.99970 * 180.02562 * 6 5 4 8 8 C 1.39601 * 119.99634 * 0.02562 * 6 5 4 9 9 N 1.31163 * 120.00488 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99536 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47283 * 90.00206 * 10 8 6 12 12 H 1.48507 * 109.46937 * 209.99699 * 10 8 6 13 13 H 1.48498 * 109.47515 * 329.99792 * 10 8 6 14 14 C 1.41504 * 106.79136 * 359.97438 * 5 4 3 15 15 C 1.39293 * 133.61352 * 180.02562 * 14 5 4 16 16 C 1.38010 * 119.16705 * 179.31398 * 15 14 5 17 17 C 1.40220 * 119.41284 * 0.56347 * 16 15 14 18 18 Cl 1.73601 * 119.81844 * 179.62225 * 17 16 15 19 19 C 1.35438 * 120.35590 * 359.64632 * 17 16 15 20 20 N 1.36359 * 124.95060 * 269.72420 * 3 2 1 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 25 25 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 26 26 H 0.96993 * 120.00504 * 180.02562 * 9 8 6 27 27 H 1.08003 * 120.41531 * 359.97438 * 15 14 5 28 28 H 1.08007 * 120.29432 * 180.20474 * 16 15 14 29 29 H 1.08004 * 119.67586 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2817 2.1248 1.0687 5 6 2.7167 3.3538 0.7165 6 6 3.0838 4.3920 1.5854 7 1 3.4182 5.3378 1.1857 8 6 3.0169 4.2024 2.9669 9 7 2.6113 3.0534 3.4524 10 14 3.5051 5.5852 4.1240 11 1 2.3144 6.4177 4.4307 12 1 4.0445 5.0103 5.3825 13 1 4.5447 6.4268 3.4788 14 6 2.7309 3.3926 -0.6980 15 6 3.0772 4.3691 -1.6289 16 6 2.9892 4.0767 -2.9748 17 6 2.5427 2.8095 -3.3764 18 17 2.4187 2.4337 -5.0667 19 6 2.2073 1.8775 -2.4527 20 7 2.2978 2.1555 -1.1176 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.5644 2.9218 4.4122 27 1 3.4205 5.3394 -1.3016 28 1 3.2563 4.8192 -3.7123 29 1 1.8652 0.9049 -2.7743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023650.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:30 Heat of formation + Delta-G solvation = 45.457964 kcal Electronic energy + Delta-G solvation = -15677.499637 eV Core-core repulsion = 13012.377898 eV Total energy + Delta-G solvation = -2665.121739 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.83708 -38.35122 -36.98078 -35.80088 -34.23907 -33.17694 -30.87035 -29.71379 -26.73857 -24.83769 -24.03186 -22.41757 -21.33751 -19.22005 -17.51777 -17.39461 -16.92317 -16.37607 -16.31240 -15.56260 -15.07978 -14.65214 -14.54862 -13.86150 -13.53434 -13.22643 -12.94698 -12.88186 -12.77099 -12.60562 -12.25707 -11.98202 -11.86943 -11.86559 -11.80513 -11.31586 -10.75915 -10.30933 -9.59202 -8.43836 -8.41850 -6.04606 0.16460 0.56045 1.02620 1.43055 1.46373 1.57262 2.25412 2.42470 2.48978 2.65271 3.57416 3.74915 3.82200 4.14983 4.17444 4.44802 4.46190 4.53055 4.62322 4.85124 4.96367 5.07583 5.18289 5.28017 5.32946 5.37971 5.55728 5.61865 6.03748 6.27799 6.75200 6.79745 7.07216 7.82680 8.49868 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.007177 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.035125 B = 3900.151389 C = 4915.307686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.028 4.028 3 C 0.169 3.831 4 N -0.489 5.489 5 C 0.185 3.815 6 C -0.453 4.453 7 H 0.090 0.910 8 C 0.024 3.976 9 N -0.788 5.788 10 Si 0.991 3.009 11 H -0.264 1.264 12 H -0.271 1.271 13 H -0.254 1.254 14 C -0.181 4.181 15 C 0.001 3.999 16 C -0.239 4.239 17 C -0.034 4.034 18 Cl -0.051 7.051 19 C 0.016 3.984 20 N -0.388 5.388 21 H 0.094 0.906 22 H 0.036 0.964 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.279 0.721 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -2.500 -8.456 8.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C -0.087 4.087 4 N -0.211 5.211 5 C 0.057 3.943 6 C -0.487 4.487 7 H 0.109 0.891 8 C -0.195 4.195 9 N -0.413 5.413 10 Si 0.811 3.189 11 H -0.189 1.189 12 H -0.196 1.196 13 H -0.178 1.178 14 C -0.281 4.281 15 C -0.019 4.019 16 C -0.259 4.259 17 C -0.065 4.065 18 Cl -0.022 7.022 19 C -0.103 4.103 20 N -0.068 5.068 21 H 0.113 0.887 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.560 -3.059 -7.646 8.382 hybrid contribution 0.284 0.801 -0.304 0.903 sum -1.276 -2.258 -7.951 8.363 Atomic orbital electron populations 1.21638 0.93295 1.03086 1.01062 1.19986 0.96930 0.85772 1.03989 1.24440 1.06431 0.98078 0.79783 1.70791 1.20181 1.04924 1.25185 1.18829 0.95598 0.91920 0.87977 1.18889 1.40048 0.98596 0.91181 0.89149 1.26861 0.93280 0.98991 1.00318 1.70251 1.32034 1.24468 1.14517 0.85077 0.79368 0.77586 0.76871 1.18906 1.19565 1.17776 1.19519 1.23586 0.89719 0.95247 1.20490 0.93237 0.96998 0.91136 1.20744 1.13334 0.96811 0.94998 1.19927 1.06238 0.95520 0.84859 1.98311 1.96926 1.94521 1.12466 1.21220 1.07037 1.01050 0.80991 1.42293 1.47433 1.12409 1.04701 0.88733 0.94430 0.93353 0.88802 0.89518 0.91070 0.84144 0.83722 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.89 71.98 0.71 -3.21 15 2 C -0.03 -0.94 6.37 29.85 0.19 -0.75 15 3 C 0.17 7.85 7.19 137.74 0.99 8.84 15 4 N -0.49 -27.29 9.41 -178.87 -1.68 -28.97 15 5 C 0.18 10.42 6.71 39.95 0.27 10.69 15 6 C -0.45 -24.89 9.33 23.09 0.22 -24.67 15 7 H 0.09 4.60 7.84 -2.91 -0.02 4.58 15 8 C 0.02 1.23 5.49 85.12 0.47 1.70 15 9 N -0.79 -43.46 11.94 21.78 0.26 -43.20 15 10 Si 0.99 38.81 29.56 68.60 2.03 40.84 15 11 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 12 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 13 H -0.25 -9.50 7.11 99.48 0.71 -8.80 15 14 C -0.18 -9.04 6.78 39.29 0.27 -8.77 15 15 C 0.00 0.06 10.11 22.47 0.23 0.29 15 16 C -0.24 -8.66 9.94 22.70 0.23 -8.43 15 17 C -0.03 -1.18 6.28 22.10 0.14 -1.05 15 18 Cl -0.05 -1.38 28.94 -2.72 -0.08 -1.46 15 19 C 0.02 0.60 10.52 83.29 0.88 1.47 15 20 N -0.39 -17.50 2.95 -335.78 -0.99 -18.49 15 21 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.05 1.41 8.14 -2.38 -0.02 1.39 15 24 H 0.09 2.58 7.93 -2.39 -0.02 2.56 15 25 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 26 H 0.28 13.98 8.30 -92.71 -0.77 13.21 15 27 H 0.14 5.40 8.06 -2.91 -0.02 5.38 15 28 H 0.15 4.40 8.06 -2.91 -0.02 4.38 15 29 H 0.17 5.10 7.90 -2.91 -0.02 5.08 15 Total: -1.00 -65.22 273.41 5.27 -59.94 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.16 Total: 15.24 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 4.58 Total: -23.89 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.41 Total: -90.67 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -65.22 5.27 -59.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023650.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.400 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds