Wall clock time and date at job start Mon Mar 30 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.37659 * 119.67488 * 300.00106 * 12 2 1 14 14 C 1.38366 * 120.37953 * 179.97438 * 13 12 2 15 15 C 1.37900 * 119.69612 * 359.97438 * 14 13 12 16 16 C 1.39242 * 120.24528 * 0.02562 * 15 14 13 17 17 S 1.76237 * 130.56596 * 179.97438 * 16 15 14 18 18 C 1.75787 * 90.58621 * 180.02562 * 17 16 15 19 19 O 1.21630 * 125.07162 * 180.02562 * 18 17 16 20 20 O 1.32214 * 109.84701 * 0.02562 * 18 17 16 21 21 C 1.34488 * 117.13227 * 359.73699 * 20 18 17 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.08003 * 119.80937 * 359.97286 * 13 12 2 27 27 H 1.07993 * 120.14917 * 179.97438 * 14 13 12 28 28 H 1.07993 * 119.88025 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 6 1.6956 -2.0283 -1.4419 14 6 2.1484 -2.6944 -2.5670 15 6 2.9408 -2.0318 -3.4806 16 6 3.2854 -0.6987 -3.2735 17 16 4.2669 0.3957 -4.2455 18 6 4.0122 1.6875 -3.0809 19 8 4.4665 2.8120 -3.1740 20 8 3.2531 1.2543 -2.0888 21 6 2.8329 -0.0217 -2.1502 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7006 1.1552 3.4844 26 1 1.0746 -2.5453 -0.7253 27 1 1.8823 -3.7284 -2.7288 28 1 3.2961 -2.5490 -4.3595 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025805.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:55 Heat of formation + Delta-G solvation = -35.722054 kcal Electronic energy + Delta-G solvation = -15739.902151 eV Core-core repulsion = 13041.011137 eV Total energy + Delta-G solvation = -2698.891014 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.78951 -38.83540 -37.36664 -34.64866 -31.71709 -30.32191 -28.52181 -25.62919 -25.26257 -23.32008 -22.18451 -20.47251 -19.07580 -17.13056 -17.05489 -16.82172 -15.90757 -15.81344 -14.71686 -14.49527 -13.78941 -13.46365 -13.27153 -12.66133 -12.56667 -12.08010 -11.70786 -11.62680 -11.22132 -11.01159 -10.96156 -10.48638 -10.24050 -10.23112 -9.89100 -9.66886 -9.17251 -8.48259 -8.15211 -7.94397 -6.11714 -4.20745 0.84020 1.08304 1.33567 1.50348 1.94825 2.57927 3.25307 3.31025 3.32728 3.81405 4.34056 4.60315 5.13008 5.19486 5.36786 5.53975 5.57864 6.01240 6.16426 6.38682 6.61218 6.76053 6.81483 6.84908 6.94035 7.05906 7.28369 7.56529 7.77235 7.94244 8.20255 8.80649 9.44727 10.93971 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.007344 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.769356 B = 3811.508564 C = 4317.609646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 H 0.044 0.956 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.001 4.001 13 C -0.075 4.075 14 C -0.114 4.114 15 C -0.078 4.078 16 C -0.182 4.182 17 S -0.020 6.020 18 C 0.475 3.525 19 O -0.418 6.418 20 O -0.233 6.233 21 C 0.078 3.922 22 H 0.010 0.990 23 H 0.032 0.968 24 H 0.090 0.910 25 H 0.264 0.736 26 H 0.147 0.853 27 H 0.135 0.865 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -6.241 -10.716 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 H 0.062 0.938 4 C -0.554 4.554 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.003 4.003 13 C -0.095 4.095 14 C -0.134 4.134 15 C -0.100 4.100 16 C -0.295 4.295 17 S 0.218 5.782 18 C 0.209 3.791 19 O -0.306 6.306 20 O -0.144 6.144 21 C 0.029 3.971 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.164 0.836 27 H 0.152 0.848 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.505 -5.423 -11.620 13.066 hybrid contribution -0.169 -0.323 1.842 1.878 sum 2.336 -5.745 -9.778 11.579 Atomic orbital electron populations 1.21816 0.96830 0.99576 1.00786 1.17987 0.93362 0.96121 0.87630 0.93830 1.20986 1.32019 1.12797 0.89566 0.92241 1.24948 0.94812 0.94907 0.99026 1.69864 1.35983 1.22579 1.23860 0.86590 0.79295 0.79713 0.82046 1.20189 1.21175 1.20082 1.20235 0.92126 0.93325 0.94571 1.21022 0.98866 0.92753 0.96846 1.21140 0.97886 1.00086 0.94277 1.20195 0.99189 0.90390 1.00250 1.22418 1.07850 1.00457 0.98797 1.85967 1.57816 1.06058 1.28383 1.24281 0.79756 0.92028 0.83053 1.90996 1.48666 1.18713 1.72219 1.83245 1.57812 1.28182 1.45160 1.19033 1.01209 0.80057 0.96771 0.97089 0.94897 0.89141 0.92626 0.83561 0.84760 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.78 37.16 0.33 -2.66 15 2 C 0.07 1.61 2.48 -92.92 -0.23 1.38 15 3 H 0.04 1.18 7.47 -51.93 -0.39 0.79 15 4 C -0.52 -13.27 8.22 -34.44 -0.28 -13.56 15 5 H 0.06 1.49 7.59 -52.49 -0.40 1.09 15 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -24.35 11.31 55.43 0.63 -23.72 15 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 12 C 0.00 -0.01 4.78 -104.16 -0.50 -0.51 15 13 C -0.08 -1.25 8.63 -39.75 -0.34 -1.59 15 14 C -0.11 -1.50 10.06 -39.66 -0.40 -1.90 15 15 C -0.08 -1.04 10.06 -39.33 -0.40 -1.43 15 16 C -0.18 -2.91 6.45 -39.03 -0.25 -3.17 15 17 S -0.02 -0.30 23.38 -107.50 -2.51 -2.81 15 18 C 0.47 8.80 8.92 101.05 0.90 9.70 15 19 O -0.42 -8.39 18.05 -19.17 -0.35 -8.73 15 20 O -0.23 -4.80 9.45 -14.11 -0.13 -4.93 15 21 C 0.08 1.51 6.83 -38.73 -0.26 1.24 15 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 23 H 0.03 0.67 7.35 -51.93 -0.38 0.29 15 24 H 0.09 2.27 6.06 -51.93 -0.31 1.96 15 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 26 H 0.15 2.34 7.51 -52.48 -0.39 1.94 15 27 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 LS Contribution 262.10 15.07 3.95 3.95 Total: -1.00 -27.98 262.10 -7.25 -35.23 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -2.28 Total: -3.50 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.53 Total: -10.86 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.63 Total: -23.72 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.48 Total: -13.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -2.51 Total: -2.81 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.98 -7.25 -35.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025805.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.494 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds