Wall clock time and date at job start Mon Mar 30 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.37659 * 119.67488 * 300.00106 * 12 2 1 14 14 C 1.38366 * 120.37953 * 179.97438 * 13 12 2 15 15 C 1.37900 * 119.69612 * 359.97438 * 14 13 12 16 16 C 1.39242 * 120.24528 * 0.02562 * 15 14 13 17 17 S 1.76237 * 130.56596 * 179.97438 * 16 15 14 18 18 C 1.75787 * 90.58621 * 180.02562 * 17 16 15 19 19 O 1.21630 * 125.07162 * 180.02562 * 18 17 16 20 20 O 1.32214 * 109.84701 * 0.02562 * 18 17 16 21 21 C 1.34488 * 117.13227 * 359.73699 * 20 18 17 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.08003 * 119.80937 * 359.97286 * 13 12 2 27 27 H 1.07993 * 120.14917 * 179.97438 * 14 13 12 28 28 H 1.07993 * 119.88025 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0323 -0.7103 -1.2306 13 6 1.6956 -2.0283 -1.4419 14 6 2.1484 -2.6944 -2.5670 15 6 2.9408 -2.0318 -3.4806 16 6 3.2854 -0.6987 -3.2735 17 16 4.2669 0.3957 -4.2455 18 6 4.0122 1.6875 -3.0809 19 8 4.4665 2.8120 -3.1740 20 8 3.2531 1.2543 -2.0888 21 6 2.8329 -0.0217 -2.1502 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7006 1.1552 3.4844 26 1 1.0746 -2.5453 -0.7253 27 1 1.8823 -3.7284 -2.7288 28 1 3.2961 -2.5490 -4.3595 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025805.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:54 Heat of formation + Delta-G solvation = -50.567237 kcal Electronic energy + Delta-G solvation = -15740.545887 eV Core-core repulsion = 13041.011137 eV Total energy + Delta-G solvation = -2699.534749 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.19368 -40.19965 -38.77972 -36.36851 -33.49819 -31.57878 -30.08103 -27.24400 -26.97846 -24.77483 -23.54777 -22.07713 -20.44017 -18.61898 -18.52737 -18.41057 -17.51524 -17.13586 -16.47798 -15.83714 -15.13517 -14.97764 -14.77341 -14.38630 -13.84791 -13.59686 -13.31693 -13.03274 -12.81190 -12.75014 -12.64423 -12.22763 -12.04560 -11.66723 -11.34611 -11.27105 -10.94635 -10.49222 -9.51493 -9.17992 -8.11659 -6.27530 -0.48888 -0.21621 0.05124 0.24241 0.60725 1.22753 1.43630 1.45402 1.52545 2.40811 2.59534 3.16850 3.35255 4.02524 4.23511 4.29038 4.32704 4.61895 4.87792 4.91240 5.11590 5.16576 5.24391 5.41401 5.44122 5.57727 5.64934 5.83840 5.96613 6.05483 6.25499 6.81288 7.41319 8.93147 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.007344 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.769356 B = 3811.508564 C = 4317.609646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.068 3.932 3 H -0.008 1.008 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.259 1.259 12 C -0.036 4.036 13 C -0.077 4.077 14 C -0.091 4.091 15 C -0.058 4.058 16 C -0.193 4.193 17 S 0.071 5.929 18 C 0.452 3.548 19 O -0.453 6.453 20 O -0.269 6.269 21 C 0.046 3.954 22 H 0.020 0.980 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.262 0.738 26 H 0.149 0.851 27 H 0.185 0.815 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 -9.788 -12.691 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 H 0.010 0.990 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.184 1.184 12 C -0.038 4.038 13 C -0.096 4.096 14 C -0.111 4.111 15 C -0.080 4.080 16 C -0.307 4.307 17 S 0.310 5.690 18 C 0.188 3.812 19 O -0.345 6.345 20 O -0.181 6.181 21 C -0.002 4.002 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.167 0.833 27 H 0.203 0.797 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.084 -9.004 -13.614 16.611 hybrid contribution -0.336 0.710 2.339 2.467 sum 2.748 -8.295 -11.276 14.265 Atomic orbital electron populations 1.21643 0.96332 1.00280 0.99668 1.17743 0.93908 0.93775 0.89675 0.98953 1.21339 1.31495 1.12748 0.90540 0.91851 1.25775 0.95101 0.95620 1.02072 1.70027 1.37411 1.24121 1.24195 0.85608 0.78447 0.79259 0.78357 1.20275 1.21366 1.18353 1.19971 0.94837 0.94968 0.94054 1.21176 0.98783 0.91254 0.98384 1.21632 0.95681 1.01838 0.91924 1.20837 0.97131 0.88824 1.01185 1.22791 1.08068 1.01764 0.98081 1.85575 1.56240 1.02324 1.24894 1.24927 0.79554 0.92907 0.83768 1.90956 1.49790 1.20357 1.73362 1.83170 1.58497 1.29599 1.46850 1.19169 1.02643 0.79900 0.98463 0.96115 0.93076 0.92223 0.92905 0.83310 0.79735 0.80568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.78 71.98 0.63 -5.05 15 2 C 0.07 3.39 2.48 -12.29 -0.03 3.36 15 3 H -0.01 -0.46 7.47 -2.38 -0.02 -0.47 15 4 C -0.52 -27.63 8.22 25.60 0.21 -27.42 15 5 H 0.06 3.20 7.59 -2.91 -0.02 3.18 15 6 C 0.01 0.72 5.30 84.65 0.45 1.17 15 7 N -0.92 -52.79 11.31 21.45 0.24 -52.54 15 8 Si 0.96 42.32 29.54 68.60 2.03 44.35 15 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 10 H -0.29 -12.69 7.11 99.48 0.71 -11.99 15 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 15 12 C -0.04 -1.47 4.78 -19.57 -0.09 -1.56 15 13 C -0.08 -2.35 8.63 22.16 0.19 -2.16 15 14 C -0.09 -1.90 10.06 22.22 0.22 -1.68 15 15 C -0.06 -1.22 10.06 22.43 0.23 -0.99 15 16 C -0.19 -5.67 6.45 22.63 0.15 -5.52 15 17 S 0.07 1.93 23.38 -56.49 -1.32 0.61 15 18 C 0.45 17.19 8.92 113.37 1.01 18.20 15 19 O -0.45 -19.01 18.05 19.22 0.35 -18.66 15 20 O -0.27 -11.70 9.45 37.32 0.35 -11.35 15 21 C 0.05 1.79 6.83 22.82 0.16 1.95 15 22 H 0.02 0.87 8.14 -2.38 -0.02 0.85 15 23 H 0.05 2.13 7.35 -2.39 -0.02 2.11 15 24 H 0.06 3.15 6.06 -2.38 -0.01 3.13 15 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 15 26 H 0.15 4.41 7.51 -2.91 -0.02 4.39 15 27 H 0.19 2.09 8.06 -2.91 -0.02 2.07 15 28 H 0.18 2.18 8.06 -2.91 -0.02 2.16 15 Total: -1.00 -65.69 262.10 5.96 -59.73 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: 1.19 Total: -2.41 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.12 Total: -19.72 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.24 Total: -52.54 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: 0.70 Total: -30.01 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.32 Total: 0.61 kcal Total: -65.69 5.96 -59.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025805.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.161 kcal (2) G-P(sol) polarization free energy of solvation -65.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds