Wall clock time and date at job start Mon Mar 30 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00027 * 2 1 4 4 H 1.48501 * 109.46959 * 240.00164 * 3 2 1 5 5 H 1.48503 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47057 * 119.99993 * 3 2 1 7 7 C 1.37871 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47008 * 180.02562 * 10 9 7 12 12 N 1.30092 * 124.95593 * 304.98096 * 11 10 9 13 13 C 1.35793 * 109.64589 * 179.97438 * 12 11 10 14 14 C 1.40495 * 106.94693 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.94045 * 179.97438 * 14 13 12 16 16 C 1.37863 * 119.85230 * 359.96686 * 15 14 13 17 17 C 1.38745 * 120.46903 * 0.03516 * 16 15 14 18 18 C 1.37738 * 120.51166 * 359.97438 * 17 16 15 19 19 Cl 1.73596 * 120.12657 * 180.02562 * 18 17 16 20 20 N 1.36061 * 124.94721 * 125.26255 * 11 10 9 21 21 H 0.96997 * 126.35280 * 359.79274 * 20 11 10 22 22 H 0.97004 * 120.00151 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46595 * 60.00606 * 9 7 2 24 24 H 1.09000 * 109.47145 * 299.99996 * 9 7 2 25 25 H 1.09010 * 109.46911 * 60.00421 * 10 9 7 26 26 H 1.08990 * 109.47548 * 300.00483 * 10 9 7 27 27 H 1.07998 * 120.07230 * 179.97438 * 15 14 13 28 28 H 1.08005 * 119.76382 * 179.97438 * 16 15 14 29 29 H 1.07994 * 119.74335 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4917 -4.9671 -0.0025 12 7 0.5901 -5.3076 0.8713 13 6 0.1127 -6.5442 0.5765 14 6 0.7887 -6.9803 -0.5754 15 6 0.5040 -8.2268 -1.1155 16 6 -0.4414 -9.0336 -0.5189 17 6 -1.1123 -8.6084 0.6187 18 6 -0.8434 -7.3746 1.1690 19 17 -1.6883 -6.8529 2.5929 20 7 1.6593 -5.9634 -0.9139 21 1 2.2718 -5.9576 -1.6660 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6247 -2.5571 0.8897 25 1 2.8726 -3.6047 0.8878 26 1 2.8713 -3.6039 -0.8921 27 1 1.0221 -8.5640 -2.0011 28 1 -0.6621 -10.0031 -0.9406 29 1 -1.8510 -9.2497 1.0762 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261030066.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:07 Heat of formation + Delta-G solvation = 44.943650 kcal Electronic energy + Delta-G solvation = -15040.899613 eV Core-core repulsion = 12375.755572 eV Total energy + Delta-G solvation = -2665.144042 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.94204 -37.53707 -36.07498 -33.87669 -32.84605 -31.59195 -29.70510 -28.65444 -25.61140 -22.61749 -22.23379 -21.58234 -19.97001 -17.82605 -17.16258 -16.34621 -15.36893 -15.18953 -14.50035 -14.46568 -14.42872 -13.29434 -12.96352 -12.59026 -12.28629 -12.16072 -11.79415 -11.34767 -11.06137 -10.94288 -10.68912 -10.65901 -10.29227 -10.06339 -9.75185 -9.57825 -9.20100 -8.37331 -8.27320 -7.86099 -6.01329 -4.06061 0.89923 1.46215 2.34793 3.01878 3.07660 3.32286 3.37481 3.39046 3.82554 4.35669 4.44734 4.74456 5.06251 5.13358 5.32544 5.34269 5.46857 5.52730 5.91557 6.01877 6.28399 6.30012 6.31592 6.50179 6.74022 6.81252 7.50909 7.61924 7.77438 7.98056 8.20068 8.32550 9.00323 9.57950 11.09531 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.032403 B = 0.004964 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.910616 B = 5639.539034 C = 6275.634400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.043 4.043 11 C 0.321 3.679 12 N -0.480 5.480 13 C 0.061 3.939 14 C 0.047 3.953 15 C -0.105 4.105 16 C -0.106 4.106 17 C -0.124 4.124 18 C 0.013 3.987 19 Cl -0.059 7.059 20 N -0.603 5.603 21 H 0.422 0.578 22 H 0.262 0.738 23 H 0.016 0.984 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -17.798 -2.158 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.082 4.082 11 C 0.055 3.945 12 N -0.200 5.200 13 C -0.060 4.060 14 C -0.064 4.064 15 C -0.126 4.126 16 C -0.126 4.126 17 C -0.145 4.145 18 C -0.015 4.015 19 Cl -0.030 7.030 20 N -0.214 5.214 21 H 0.261 0.739 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.153 0.847 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.432 -17.147 -1.283 17.200 hybrid contribution 0.875 0.504 -1.016 1.432 sum 1.306 -16.643 -2.299 16.852 Atomic orbital electron populations 1.69972 1.06067 1.26861 1.49864 1.25006 0.94833 0.99259 0.95134 0.86631 0.79543 0.83054 0.78594 1.20273 1.21271 1.20134 1.21112 0.92951 0.90732 1.51858 0.92486 1.19057 0.93394 0.89396 0.98669 1.20659 0.98287 0.86605 1.02619 1.24625 0.93897 0.91565 0.84426 1.70644 1.12225 1.10722 1.26373 1.18779 0.98777 0.93499 0.94909 1.18738 0.96496 0.92380 0.98749 1.19971 1.00423 0.91281 1.00967 1.20684 0.96506 0.99673 0.95719 1.20731 1.01980 0.94421 0.97413 1.20032 0.95909 0.94149 0.91399 1.98365 1.76046 1.90892 1.37697 1.43363 1.35288 1.14742 1.27983 0.73880 0.92800 0.96564 0.94574 0.89293 0.91006 0.85732 0.84726 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.03 0.84 4.91 -27.88 -0.14 0.70 15 10 C -0.04 -0.83 5.78 -27.88 -0.16 -0.99 15 11 C 0.32 6.00 7.37 -154.82 -1.14 4.86 15 12 N -0.48 -10.05 11.21 -8.21 -0.09 -10.14 15 13 C 0.06 1.11 7.03 -84.67 -0.60 0.51 15 14 C 0.05 0.72 7.30 -83.99 -0.61 0.11 15 15 C -0.11 -1.23 10.06 -39.51 -0.40 -1.63 15 16 C -0.11 -1.12 10.02 -39.53 -0.40 -1.51 15 17 C -0.12 -1.52 9.80 -39.58 -0.39 -1.91 15 18 C 0.01 0.22 6.35 -39.17 -0.25 -0.03 15 19 Cl -0.06 -0.94 28.97 -51.86 -1.50 -2.45 15 20 N -0.60 -8.92 6.23 -8.00 -0.05 -8.97 15 21 H 0.42 4.59 8.96 -40.82 -0.37 4.22 15 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.04 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 15 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.12 1.08 8.06 -52.49 -0.42 0.65 15 28 H 0.13 0.94 8.06 -52.48 -0.42 0.52 15 29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 15 LS Contribution 275.51 15.07 4.15 4.15 Total: -1.00 -32.54 275.51 -9.13 -41.67 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -2.87 Total: -1.38 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -4.49 Total: -13.12 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.59 Total: -45.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.54 -9.13 -41.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030066.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.612 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds