Wall clock time and date at job start Mon Mar 30 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99989 * 2 1 4 4 H 1.48500 * 109.47050 * 85.06660 * 3 2 1 5 5 H 1.48493 * 109.47284 * 205.07128 * 3 2 1 6 6 H 1.48499 * 109.47092 * 325.07100 * 3 2 1 7 7 C 1.37878 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00153 * 173.63109 * 7 2 1 9 9 C 1.50703 * 119.99977 * 353.63209 * 7 2 1 10 10 H 1.09004 * 109.47086 * 57.78491 * 9 7 2 11 11 N 1.46900 * 109.46813 * 297.79102 * 9 7 2 12 12 C 1.50697 * 109.47071 * 177.78874 * 9 7 2 13 13 C 1.34238 * 126.49633 * 99.68796 * 12 9 7 14 14 N 1.36818 * 109.93473 * 179.88977 * 13 12 9 15 15 H 0.96997 * 125.07301 * 180.12001 * 14 13 12 16 16 C 1.37733 * 109.86483 * 0.38426 * 14 13 12 17 17 C 1.40669 * 107.15374 * 359.77264 * 16 14 13 18 18 C 1.39621 * 119.93354 * 179.97438 * 17 16 14 19 19 C 1.36650 * 119.79287 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.53568 * 359.97438 * 19 18 17 21 21 C 1.37895 * 120.64819 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.11982 * 179.97438 * 21 20 19 23 23 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 24 24 H 1.00907 * 110.99839 * 305.63499 * 11 9 7 25 25 H 1.00900 * 111.00496 * 69.59233 * 11 9 7 26 26 H 1.08004 * 125.03732 * 0.02848 * 13 12 9 27 27 H 1.07998 * 120.10511 * 180.02562 * 18 17 16 28 28 H 1.08001 * 119.74054 * 180.02562 * 19 18 17 29 29 H 1.07997 * 119.67764 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3924 2.1066 1.3949 5 1 3.5949 1.4124 -0.5932 6 1 1.5026 2.6203 -0.8016 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1043 9 6 1.2581 -2.4952 0.1436 10 1 0.5216 -2.5820 -0.6552 11 7 0.5758 -2.5267 1.4442 12 6 2.2298 -3.6439 0.0582 13 6 2.7453 -4.3320 1.0891 14 7 3.5887 -5.3045 0.6256 15 1 4.0778 -5.9300 1.1828 16 6 3.6443 -5.2593 -0.7498 17 6 2.7956 -4.2173 -1.1653 18 6 2.6521 -3.9359 -2.5253 19 6 3.3382 -4.6748 -3.4476 20 6 4.1779 -5.7034 -3.0437 21 6 4.3346 -5.9986 -1.7058 22 17 5.3879 -7.2887 -1.2160 23 1 -0.4850 0.8400 0.0004 24 1 1.2251 -2.3560 2.1974 25 1 -0.1874 -1.8671 1.4682 26 1 2.5251 -4.1470 2.1301 27 1 2.0015 -3.1362 -2.8474 28 1 3.2269 -4.4561 -4.4994 29 1 4.7138 -6.2783 -3.7844 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032795.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:06 Heat of formation + Delta-G solvation = 40.774535 kcal Electronic energy + Delta-G solvation = -15557.909182 eV Core-core repulsion = 12892.584354 eV Total energy + Delta-G solvation = -2665.324828 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.73796 -36.92490 -35.97926 -34.72960 -31.72026 -30.47743 -28.97791 -27.88729 -25.87953 -22.50380 -22.37566 -21.44218 -18.57367 -17.46305 -16.45864 -16.04434 -15.24636 -14.61078 -14.18428 -14.10979 -13.87698 -13.64926 -12.85867 -12.57605 -12.15373 -11.99823 -11.46991 -11.14409 -10.99586 -10.94099 -10.87441 -10.77960 -10.52067 -10.06875 -9.66006 -8.92954 -8.54682 -7.80890 -7.32324 -6.95692 -6.07129 -4.21037 1.41707 1.96024 2.35930 3.22763 3.30662 3.33250 3.42397 3.58414 4.25327 4.38996 5.11458 5.16157 5.33699 5.50354 5.68713 5.73829 6.05951 6.20513 6.25961 6.41847 6.71582 6.82606 6.98199 7.19945 7.24929 7.57327 7.73829 7.78047 8.04449 8.14873 8.72659 8.89718 9.04830 9.48329 10.91253 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.006226 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.501387 B = 4496.232896 C = 4826.395766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.270 3.730 10 H 0.049 0.951 11 N -0.850 5.850 12 C -0.097 4.097 13 C 0.028 3.972 14 N -0.596 5.596 15 H 0.409 0.591 16 C 0.100 3.900 17 C -0.087 4.087 18 C -0.043 4.043 19 C -0.157 4.157 20 C -0.095 4.095 21 C -0.055 4.055 22 Cl -0.096 7.096 23 H 0.264 0.736 24 H 0.312 0.688 25 H 0.349 0.651 26 H 0.168 0.832 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 -9.978 -1.884 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.577 4.577 8 H 0.073 0.927 9 C 0.160 3.840 10 H 0.067 0.933 11 N -0.377 5.377 12 C -0.103 4.103 13 C -0.095 4.095 14 N -0.199 5.199 15 H 0.245 0.755 16 C -0.010 4.010 17 C -0.093 4.093 18 C -0.062 4.062 19 C -0.177 4.177 20 C -0.115 4.115 21 C -0.084 4.084 22 Cl -0.067 7.067 23 H 0.074 0.926 24 H 0.121 0.879 25 H 0.163 0.837 26 H 0.185 0.815 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.444 -10.790 -1.901 12.711 hybrid contribution 1.217 1.600 0.393 2.048 sum 7.661 -9.190 -1.508 12.059 Atomic orbital electron populations 1.69858 1.05784 1.27039 1.50504 1.25010 0.94863 0.99181 0.94576 0.86571 0.80077 0.83356 0.77972 1.20767 1.19857 1.21188 1.21816 0.94139 0.91064 1.50713 0.92666 1.17354 0.89725 0.87229 0.89726 0.93273 1.59423 1.14849 1.58418 1.04994 1.20984 1.01251 0.99148 0.88918 1.21515 0.96161 0.92272 0.99516 1.41677 1.42092 1.32060 1.04091 0.75517 1.17848 1.00478 0.98652 0.83981 1.19166 0.99551 0.96590 0.93998 1.20542 0.97062 0.97668 0.90909 1.20470 1.00091 0.97665 0.99475 1.20595 0.99797 0.98662 0.92417 1.19737 1.00583 0.95195 0.92905 1.98312 1.66060 1.50242 1.92126 0.92638 0.87896 0.83673 0.81495 0.85071 0.85699 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.14 12.02 55.43 0.67 -23.48 15 2 C 0.07 1.74 5.35 -17.82 -0.10 1.65 15 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 5 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.54 -14.11 8.64 -34.44 -0.30 -14.41 15 8 H 0.06 1.50 7.75 -52.49 -0.41 1.09 15 9 C 0.27 6.54 3.13 -70.02 -0.22 6.32 15 10 H 0.05 1.33 8.14 -51.93 -0.42 0.91 15 11 N -0.85 -19.12 8.77 -6.65 -0.06 -19.18 15 12 C -0.10 -2.07 5.40 -102.71 -0.56 -2.62 15 13 C 0.03 0.51 11.10 -16.74 -0.19 0.33 15 14 N -0.60 -9.68 6.07 -10.63 -0.06 -9.75 15 15 H 0.41 5.35 8.96 -40.82 -0.37 4.98 15 16 C 0.10 1.79 7.07 -83.95 -0.59 1.20 15 17 C -0.09 -1.74 6.35 -105.14 -0.67 -2.41 15 18 C -0.04 -0.79 10.05 -39.64 -0.40 -1.19 15 19 C -0.16 -2.39 9.97 -39.95 -0.40 -2.79 15 20 C -0.09 -1.39 9.80 -39.50 -0.39 -1.78 15 21 C -0.05 -0.87 6.33 -39.36 -0.25 -1.12 15 22 Cl -0.10 -1.30 28.97 -51.86 -1.50 -2.80 15 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 24 H 0.31 6.61 8.26 -39.29 -0.32 6.28 15 25 H 0.35 8.43 7.66 -39.29 -0.30 8.13 15 26 H 0.17 2.70 7.48 -52.48 -0.39 2.31 15 27 H 0.13 2.42 8.06 -52.49 -0.42 1.99 15 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 29 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 LS Contribution 270.63 15.07 4.08 4.08 Total: -1.00 -27.60 270.63 -8.57 -36.17 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -2.62 Total: 16.10 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -4.05 Total: -16.83 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.54 Total: -52.40 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.60 -8.57 -36.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032795.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.942 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds