Wall clock time and date at job start Mon Mar 30 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99989 * 2 1 4 4 H 1.48500 * 109.47050 * 85.06660 * 3 2 1 5 5 H 1.48493 * 109.47284 * 205.07128 * 3 2 1 6 6 H 1.48499 * 109.47092 * 325.07100 * 3 2 1 7 7 C 1.37878 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00153 * 173.63109 * 7 2 1 9 9 C 1.50703 * 119.99977 * 353.63209 * 7 2 1 10 10 H 1.09004 * 109.47086 * 57.78491 * 9 7 2 11 11 N 1.46900 * 109.46813 * 297.79102 * 9 7 2 12 12 C 1.50697 * 109.47071 * 177.78874 * 9 7 2 13 13 C 1.34238 * 126.49633 * 99.68796 * 12 9 7 14 14 N 1.36818 * 109.93473 * 179.88977 * 13 12 9 15 15 H 0.96997 * 125.07301 * 180.12001 * 14 13 12 16 16 C 1.37733 * 109.86483 * 0.38426 * 14 13 12 17 17 C 1.40669 * 107.15374 * 359.77264 * 16 14 13 18 18 C 1.39621 * 119.93354 * 179.97438 * 17 16 14 19 19 C 1.36650 * 119.79287 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.53568 * 359.97438 * 19 18 17 21 21 C 1.37895 * 120.64819 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.11982 * 179.97438 * 21 20 19 23 23 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 24 24 H 1.00907 * 110.99839 * 305.63499 * 11 9 7 25 25 H 1.00900 * 111.00496 * 69.59233 * 11 9 7 26 26 H 1.08004 * 125.03732 * 0.02848 * 13 12 9 27 27 H 1.07998 * 120.10511 * 180.02562 * 18 17 16 28 28 H 1.08001 * 119.74054 * 180.02562 * 19 18 17 29 29 H 1.07997 * 119.67764 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3924 2.1066 1.3949 5 1 3.5949 1.4124 -0.5932 6 1 1.5026 2.6203 -0.8016 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1043 9 6 1.2581 -2.4952 0.1436 10 1 0.5216 -2.5820 -0.6552 11 7 0.5758 -2.5267 1.4442 12 6 2.2298 -3.6439 0.0582 13 6 2.7453 -4.3320 1.0891 14 7 3.5887 -5.3045 0.6256 15 1 4.0778 -5.9300 1.1828 16 6 3.6443 -5.2593 -0.7498 17 6 2.7956 -4.2173 -1.1653 18 6 2.6521 -3.9359 -2.5253 19 6 3.3382 -4.6748 -3.4476 20 6 4.1779 -5.7034 -3.0437 21 6 4.3346 -5.9986 -1.7058 22 17 5.3879 -7.2887 -1.2160 23 1 -0.4850 0.8400 0.0004 24 1 1.2251 -2.3560 2.1974 25 1 -0.1874 -1.8671 1.4682 26 1 2.5251 -4.1470 2.1301 27 1 2.0015 -3.1362 -2.8474 28 1 3.2269 -4.4561 -4.4994 29 1 4.7138 -6.2783 -3.7844 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032795.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:05 Heat of formation + Delta-G solvation = 23.512426 kcal Electronic energy + Delta-G solvation = -15558.657723 eV Core-core repulsion = 12892.584354 eV Total energy + Delta-G solvation = -2666.073369 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.10818 -38.19592 -37.18634 -36.56354 -33.56925 -31.98167 -30.30364 -29.34499 -27.83720 -24.29459 -23.71816 -22.74740 -20.08117 -18.90255 -18.47981 -17.40451 -16.60516 -16.40151 -15.74063 -15.52394 -15.22369 -15.12847 -14.66964 -14.24485 -13.49245 -13.33855 -13.08372 -12.90862 -12.76460 -12.56020 -12.17666 -12.12628 -11.95960 -11.89121 -11.50972 -10.68978 -10.20106 -9.19756 -9.13583 -8.46874 -8.02225 -6.29624 0.09670 0.66162 1.15013 1.37596 1.40688 1.50216 1.91802 2.27837 2.42194 2.92100 3.09918 3.88079 4.07876 4.17445 4.35623 4.43159 4.56598 4.77351 4.99084 5.00580 5.11485 5.38031 5.56235 5.64950 5.69352 5.83060 6.03447 6.12205 6.23722 6.72365 6.79004 6.94015 7.15427 7.43943 8.87964 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.006226 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.501387 B = 4496.232896 C = 4826.395766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.040 0.960 9 C 0.280 3.720 10 H 0.006 0.994 11 N -0.837 5.837 12 C -0.147 4.147 13 C 0.050 3.950 14 N -0.582 5.582 15 H 0.426 0.574 16 C 0.090 3.910 17 C -0.118 4.118 18 C -0.075 4.075 19 C -0.141 4.141 20 C -0.089 4.089 21 C -0.058 4.058 22 Cl -0.071 7.071 23 H 0.265 0.735 24 H 0.321 0.679 25 H 0.339 0.661 26 H 0.188 0.812 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 -11.139 -2.112 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.209 1.209 7 C -0.586 4.586 8 H 0.059 0.941 9 C 0.169 3.831 10 H 0.024 0.976 11 N -0.363 5.363 12 C -0.154 4.154 13 C -0.074 4.074 14 N -0.187 5.187 15 H 0.265 0.735 16 C -0.020 4.020 17 C -0.124 4.124 18 C -0.094 4.094 19 C -0.160 4.160 20 C -0.108 4.108 21 C -0.087 4.087 22 Cl -0.042 7.042 23 H 0.075 0.925 24 H 0.131 0.869 25 H 0.151 0.849 26 H 0.204 0.796 27 H 0.131 0.869 28 H 0.175 0.825 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.297 -11.986 -2.120 14.731 hybrid contribution 0.697 1.854 0.413 2.024 sum 8.994 -10.131 -1.707 13.655 Atomic orbital electron populations 1.69955 1.06804 1.27715 1.51023 1.25664 0.95595 1.01956 0.94336 0.85645 0.78589 0.79813 0.78138 1.19954 1.20191 1.20904 1.21972 0.93455 0.92488 1.50718 0.94149 1.17013 0.89151 0.88046 0.88882 0.97622 1.59381 1.14505 1.57709 1.04730 1.20782 1.03214 1.00313 0.91101 1.21671 0.94837 0.91311 0.99626 1.41577 1.41508 1.31687 1.03904 0.73506 1.17985 1.00669 0.98635 0.84703 1.19387 1.00759 0.97884 0.94393 1.20610 0.98691 0.98797 0.91303 1.20817 0.98322 0.96441 1.00434 1.21035 0.98974 0.98107 0.92706 1.19923 1.00348 0.95411 0.93024 1.98322 1.65036 1.48813 1.92029 0.92533 0.86901 0.84885 0.79555 0.86903 0.82525 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.66 12.02 21.45 0.26 -50.40 15 2 C 0.02 1.32 5.35 84.65 0.45 1.78 15 3 Si 0.95 42.96 29.54 68.60 2.03 44.99 15 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 7 C -0.55 -29.60 8.64 25.60 0.22 -29.38 15 8 H 0.04 2.26 7.75 -2.92 -0.02 2.24 15 9 C 0.28 14.14 3.13 43.42 0.14 14.28 15 10 H 0.01 0.34 8.14 -2.38 -0.02 0.32 15 11 N -0.84 -38.61 8.77 -174.95 -1.53 -40.14 15 12 C -0.15 -6.47 5.40 -18.63 -0.10 -6.57 15 13 C 0.05 1.80 11.10 83.00 0.92 2.73 15 14 N -0.58 -18.05 6.07 -187.54 -1.14 -19.19 15 15 H 0.43 10.12 8.96 -92.71 -0.83 9.29 15 16 C 0.09 3.10 7.07 39.04 0.28 3.38 15 17 C -0.12 -4.83 6.35 -20.20 -0.13 -4.96 15 18 C -0.08 -2.82 10.05 22.23 0.22 -2.59 15 19 C -0.14 -4.03 9.97 22.03 0.22 -3.81 15 20 C -0.09 -2.33 9.80 22.32 0.22 -2.11 15 21 C -0.06 -1.69 6.33 22.41 0.14 -1.55 15 22 Cl -0.07 -1.69 28.97 -2.72 -0.08 -1.77 15 23 H 0.27 13.99 8.31 -92.71 -0.77 13.22 15 24 H 0.32 13.69 8.26 -89.69 -0.74 12.95 15 25 H 0.34 16.85 7.66 -89.69 -0.69 16.16 15 26 H 0.19 5.78 7.48 -2.91 -0.02 5.76 15 27 H 0.11 4.48 8.06 -2.91 -0.02 4.45 15 28 H 0.16 3.40 8.06 -2.91 -0.02 3.38 15 29 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 Total: -1.00 -60.53 270.63 1.07 -59.46 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -1.04 Total: 35.87 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 2.58 Total: -28.82 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -2.41 Total: -109.73 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -60.53 1.07 -59.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032795.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.971 kcal (2) G-P(sol) polarization free energy of solvation -60.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds