Wall clock time and date at job start Mon Mar 30 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00374 * 2 1 4 4 H 1.48498 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47298 * 300.00030 * 3 2 1 6 6 H 1.48498 * 109.47256 * 59.99643 * 3 2 1 7 7 C 1.37878 * 119.99404 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99599 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00330 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47473 * 300.00256 * 9 7 2 11 11 N 1.46900 * 109.47114 * 60.00381 * 9 7 2 12 12 C 1.50697 * 109.47352 * 180.02562 * 9 7 2 13 13 C 1.34250 * 126.49730 * 265.80310 * 12 9 7 14 14 N 1.36814 * 109.93543 * 179.91066 * 13 12 9 15 15 H 0.96998 * 125.06916 * 179.47413 * 14 13 12 16 16 C 1.37731 * 109.86441 * 359.48760 * 14 13 12 17 17 C 1.40665 * 107.15844 * 0.20468 * 16 14 13 18 18 C 1.39625 * 119.93480 * 180.34362 * 17 16 14 19 19 C 1.36651 * 119.78821 * 359.73547 * 18 17 16 20 20 C 1.38783 * 120.53869 * 0.02562 * 19 18 17 21 21 C 1.37897 * 120.65219 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.12053 * 179.97438 * 21 20 19 23 23 H 0.97001 * 119.99493 * 0.02562 * 1 2 3 24 24 H 1.00903 * 111.00151 * 59.99557 * 11 9 7 25 25 H 1.00902 * 111.00396 * 183.95183 * 11 9 7 26 26 H 1.08006 * 125.03240 * 359.37708 * 13 12 9 27 27 H 1.08001 * 120.10153 * 179.70563 * 18 17 16 28 28 H 1.07995 * 119.72797 * 180.02562 * 19 18 17 29 29 H 1.08000 * 119.67648 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2301 -3.6447 -0.0005 13 6 2.6889 -4.3029 -1.0769 14 7 3.5642 -5.2799 -0.6881 15 1 4.0196 -5.8911 -1.2880 16 6 3.7021 -5.2664 0.6823 17 6 2.8743 -4.2403 1.1726 18 6 2.8164 -3.9874 2.5445 19 6 3.5611 -4.7427 3.4061 20 6 4.3758 -5.7598 2.9287 21 6 4.4492 -6.0262 1.5777 22 17 5.4734 -7.3013 0.9956 23 1 -0.4849 0.8401 -0.0004 24 1 0.9637 -2.5251 -2.0390 25 1 -0.1580 -3.4133 -1.1912 26 1 2.4023 -4.0978 -2.0978 27 1 2.1853 -3.1971 2.9235 28 1 3.5152 -4.5466 4.4671 29 1 4.9587 -6.3479 3.6220 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032797.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:07 Heat of formation + Delta-G solvation = 49.518541 kcal Electronic energy + Delta-G solvation = -15549.614355 eV Core-core repulsion = 12884.668696 eV Total energy + Delta-G solvation = -2664.945659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84971 -37.01883 -36.05530 -34.62239 -31.70464 -30.56899 -29.06899 -27.86656 -25.92641 -22.49730 -22.37152 -21.51731 -18.68249 -17.54521 -16.36958 -16.03732 -15.34687 -14.53904 -14.27867 -14.14263 -13.95448 -13.81011 -12.93659 -12.40603 -12.30278 -12.12908 -11.67301 -11.05906 -11.01611 -10.96257 -10.86577 -10.67906 -10.58486 -9.89814 -9.36092 -8.77022 -8.38915 -7.91215 -7.19969 -6.98982 -5.83364 -3.97522 1.32547 1.87960 2.29288 3.22488 3.34826 3.43491 3.47156 3.48536 4.18454 4.53544 5.05125 5.26327 5.32888 5.41953 5.60789 5.66157 5.92811 6.14808 6.16836 6.37015 6.48884 6.62840 6.89401 7.07758 7.20984 7.43314 7.60621 7.88933 7.96038 8.27279 8.67819 9.03699 9.19402 9.70895 11.20349 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.006180 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.405934 B = 4529.959423 C = 4834.892061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.283 3.717 10 H 0.047 0.953 11 N -0.810 5.810 12 C -0.135 4.135 13 C 0.012 3.988 14 N -0.594 5.594 15 H 0.409 0.591 16 C 0.101 3.899 17 C -0.087 4.087 18 C -0.042 4.042 19 C -0.156 4.156 20 C -0.093 4.093 21 C -0.056 4.056 22 Cl -0.095 7.095 23 H 0.254 0.746 24 H 0.315 0.685 25 H 0.298 0.702 26 H 0.163 0.837 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -11.891 2.032 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.124 4.124 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.173 3.827 10 H 0.064 0.936 11 N -0.335 5.335 12 C -0.144 4.144 13 C -0.111 4.111 14 N -0.197 5.197 15 H 0.245 0.755 16 C -0.009 4.009 17 C -0.094 4.094 18 C -0.061 4.061 19 C -0.176 4.176 20 C -0.113 4.113 21 C -0.085 4.085 22 Cl -0.066 7.066 23 H 0.064 0.936 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.180 0.820 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.500 -11.242 2.106 13.156 hybrid contribution 1.497 -0.373 -0.676 1.684 sum 7.997 -11.615 1.430 14.174 Atomic orbital electron populations 1.70116 1.05601 1.25462 1.47155 1.24945 0.94607 0.98430 0.94379 0.86737 0.80319 0.84559 0.77466 1.19963 1.21158 1.21121 1.20871 0.92236 0.89423 1.53765 0.92933 1.17623 0.86711 0.87714 0.90680 0.93575 1.59194 1.27973 1.42050 1.04252 1.22514 1.02556 1.00029 0.89257 1.21468 0.96805 0.93367 0.99478 1.41610 1.41273 1.32241 1.04596 0.75469 1.17899 1.00159 0.98719 0.84081 1.19229 0.99440 0.96690 0.94023 1.20557 0.96835 0.97533 0.91167 1.20491 0.99812 0.97583 0.99712 1.20620 0.99923 0.98735 0.91979 1.19758 1.00469 0.95401 0.92885 1.98316 1.67782 1.51267 1.89264 0.93588 0.87324 0.89168 0.81952 0.84930 0.85568 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.25 12.77 55.43 0.71 -23.54 15 2 C 0.08 2.27 5.39 -17.82 -0.10 2.17 15 3 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 15 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.52 -14.08 8.71 -34.44 -0.30 -14.38 15 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 15 9 C 0.28 6.79 3.13 -70.02 -0.22 6.57 15 10 H 0.05 1.23 8.14 -51.93 -0.42 0.81 15 11 N -0.81 -18.13 8.30 -6.65 -0.06 -18.18 15 12 C -0.14 -2.78 5.36 -102.71 -0.55 -3.33 15 13 C 0.01 0.21 11.11 -16.74 -0.19 0.02 15 14 N -0.59 -9.31 6.07 -10.63 -0.06 -9.37 15 15 H 0.41 5.17 8.96 -40.82 -0.37 4.80 15 16 C 0.10 1.75 7.07 -83.95 -0.59 1.16 15 17 C -0.09 -1.70 6.35 -105.14 -0.67 -2.37 15 18 C -0.04 -0.75 10.05 -39.64 -0.40 -1.15 15 19 C -0.16 -2.29 9.97 -39.95 -0.40 -2.69 15 20 C -0.09 -1.32 9.80 -39.50 -0.39 -1.71 15 21 C -0.06 -0.86 6.34 -39.36 -0.25 -1.11 15 22 Cl -0.09 -1.25 28.97 -51.86 -1.50 -2.75 15 23 H 0.25 6.97 8.31 -40.82 -0.34 6.63 15 24 H 0.32 6.61 7.96 -39.29 -0.31 6.30 15 25 H 0.30 5.95 9.06 -39.29 -0.36 5.60 15 26 H 0.16 2.45 7.32 -52.48 -0.38 2.06 15 27 H 0.13 2.34 8.06 -52.49 -0.42 1.91 15 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 271.92 15.07 4.10 4.10 Total: -1.00 -29.68 271.92 -8.53 -38.22 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -2.65 Total: 12.21 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -4.05 Total: -16.81 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.59 Total: -51.10 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.68 -8.53 -38.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032797.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.735 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds