Wall clock time and date at job start Mon Mar 30 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47155 * 2 1 4 4 C 1.50700 * 109.47111 * 239.99369 * 2 1 3 5 5 H 1.08002 * 120.00147 * 240.00614 * 4 2 1 6 6 C 1.37878 * 119.99543 * 60.00341 * 4 2 1 7 7 N 1.31508 * 120.00395 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99678 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47035 * 90.00225 * 8 6 4 10 10 H 1.48500 * 109.46804 * 210.00199 * 8 6 4 11 11 H 1.48498 * 109.47221 * 329.99732 * 8 6 4 12 12 C 1.50709 * 109.46791 * 120.00018 * 2 1 3 13 13 C 1.33990 * 124.91689 * 239.97418 * 12 2 1 14 14 C 1.46792 * 106.17970 * 179.97438 * 13 12 2 15 15 C 1.39426 * 134.32232 * 179.97438 * 14 13 12 16 16 C 1.37827 * 119.59117 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 119.87665 * 180.02562 * 16 15 14 18 18 C 1.38860 * 120.24310 * 0.28327 * 16 15 14 19 19 C 1.37819 * 120.68152 * 359.45727 * 18 16 15 20 20 C 1.38928 * 119.97346 * 0.51953 * 19 18 16 21 21 O 1.34439 * 124.92458 * 59.97000 * 12 2 1 22 22 H 1.09001 * 109.47050 * 300.00860 * 1 2 3 23 23 H 1.09007 * 109.46724 * 60.00120 * 1 2 3 24 24 H 1.08994 * 109.47612 * 180.02562 * 1 2 3 25 25 H 0.96995 * 120.00310 * 179.97438 * 7 6 4 26 26 H 1.08001 * 126.91517 * 359.97438 * 13 12 2 27 27 H 1.08006 * 120.20609 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.66072 * 179.70058 * 18 16 15 29 29 H 1.07999 * 120.01144 * 180.28665 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1119 11 1 3.6309 -1.7568 -3.7118 12 6 2.0323 -0.7105 1.2306 13 6 2.8063 -0.1566 2.1737 14 6 3.0466 -1.2046 3.1731 15 6 3.7590 -1.2643 4.3701 16 6 3.7834 -2.4395 5.0897 17 17 4.6675 -2.5219 6.5814 18 6 3.1078 -3.5594 4.6232 19 6 2.3960 -3.5108 3.4441 20 6 2.3584 -2.3357 2.7040 21 8 1.7687 -1.9917 1.5411 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 0.7088 1.1610 -3.4844 26 1 3.1785 0.8570 2.1946 27 1 4.2891 -0.3952 4.7308 28 1 3.1372 -4.4769 5.1923 29 1 1.8707 -4.3870 3.0937 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032829.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:00 Heat of formation + Delta-G solvation = 6.841831 kcal Electronic energy + Delta-G solvation = -15293.827497 eV Core-core repulsion = 12594.738486 eV Total energy + Delta-G solvation = -2699.089012 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.97734 -37.94194 -36.17307 -34.56711 -32.40583 -30.97927 -29.92617 -28.00833 -25.31507 -23.18918 -22.34685 -21.12551 -20.06819 -17.06621 -16.93593 -16.18622 -15.49384 -15.41905 -14.60233 -13.99915 -13.62200 -13.09907 -13.02348 -12.86112 -12.53239 -12.21718 -11.60812 -11.25663 -11.16336 -11.04145 -10.89988 -10.78218 -10.45206 -10.35272 -9.89740 -9.78988 -9.20391 -8.55618 -8.22231 -7.65068 -6.18047 -4.26601 1.12519 1.38200 2.15863 2.96998 3.23409 3.27413 3.30220 3.34873 3.78566 4.31649 4.74893 4.91040 5.13606 5.19844 5.38285 5.47535 5.73655 5.92921 6.10445 6.23259 6.32641 6.52592 6.57195 6.69273 6.81183 6.90147 7.02635 7.36137 7.60801 7.82235 7.87563 8.13024 8.74092 9.39247 10.87498 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.044234 B = 0.004786 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.847329 B = 5848.912216 C = 5993.416245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.103 3.897 3 H 0.065 0.935 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.122 3.878 13 C -0.263 4.263 14 C -0.103 4.103 15 C -0.073 4.073 16 C -0.054 4.054 17 Cl -0.080 7.080 18 C -0.106 4.106 19 C -0.089 4.089 20 C 0.041 3.959 21 O -0.179 6.179 22 H 0.014 0.986 23 H 0.094 0.906 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.154 0.846 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 -4.969 12.524 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.084 3.916 3 H 0.083 0.917 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.073 3.927 13 C -0.282 4.282 14 C -0.104 4.104 15 C -0.091 4.091 16 C -0.081 4.081 17 Cl -0.051 7.051 18 C -0.125 4.125 19 C -0.108 4.108 20 C -0.008 4.008 21 O -0.080 6.080 22 H 0.034 0.966 23 H 0.113 0.887 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.172 0.828 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.165 -5.039 12.355 13.713 hybrid contribution 0.537 -0.332 -0.599 0.870 sum 3.703 -5.370 11.756 13.445 Atomic orbital electron populations 1.21821 0.96497 1.00216 1.01072 1.17910 0.93811 0.94583 0.85262 0.91678 1.20972 1.32245 1.12938 0.89491 0.92106 1.24921 0.94716 0.94903 0.99086 1.69850 1.36112 1.22603 1.24002 0.86453 0.79408 0.79379 0.82032 1.20422 1.20991 1.19745 1.23874 0.92840 0.79561 0.96375 1.22112 1.09554 1.00422 0.96075 1.19903 0.99896 0.94629 0.95971 1.20252 0.99055 0.96833 0.92996 1.20512 1.01428 0.95896 0.90225 1.98338 1.74953 1.98621 1.33208 1.20574 0.98192 0.97692 0.96042 1.19775 1.01785 0.95284 0.93934 1.19792 0.97438 0.95861 0.87671 1.84118 1.61226 1.29131 1.33495 0.96648 0.88733 0.94622 0.92526 0.82818 0.84945 0.84416 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.95 37.16 0.33 -2.89 15 2 C 0.10 2.48 2.69 -92.92 -0.25 2.23 15 3 H 0.07 1.62 8.08 -51.93 -0.42 1.20 15 4 C -0.52 -13.83 8.55 -34.44 -0.29 -14.12 15 5 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -24.02 11.32 55.43 0.63 -23.39 15 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 12 C 0.12 2.67 5.67 -35.80 -0.20 2.47 15 13 C -0.26 -5.12 10.97 -37.62 -0.41 -5.53 15 14 C -0.10 -1.86 6.40 -105.16 -0.67 -2.53 15 15 C -0.07 -1.11 9.87 -39.29 -0.39 -1.49 15 16 C -0.05 -0.75 6.32 -39.50 -0.25 -1.00 15 17 Cl -0.08 -0.95 28.95 -51.86 -1.50 -2.45 15 18 C -0.11 -1.39 9.79 -39.50 -0.39 -1.78 15 19 C -0.09 -1.32 10.06 -39.48 -0.40 -1.72 15 20 C 0.04 0.75 7.41 -38.49 -0.29 0.47 15 21 O -0.18 -3.88 10.58 3.82 0.04 -3.83 15 22 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 23 H 0.09 2.37 6.07 -51.92 -0.32 2.05 15 24 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 25 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 26 H 0.15 2.66 8.06 -52.49 -0.42 2.24 15 27 H 0.13 1.76 8.06 -52.48 -0.42 1.34 15 28 H 0.14 1.40 8.06 -52.49 -0.42 0.97 15 29 H 0.14 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 272.40 15.07 4.11 4.11 Total: -1.00 -27.07 272.40 -7.86 -34.93 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -2.81 Total: -0.79 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -3.30 Total: -24.23 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.63 Total: -23.39 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.07 -7.86 -34.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032829.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.775 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds