Wall clock time and date at job start Mon Mar 30 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47155 * 2 1 4 4 C 1.50700 * 109.47111 * 239.99369 * 2 1 3 5 5 H 1.08002 * 120.00147 * 240.00614 * 4 2 1 6 6 C 1.37878 * 119.99543 * 60.00341 * 4 2 1 7 7 N 1.31508 * 120.00395 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99678 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47035 * 90.00225 * 8 6 4 10 10 H 1.48500 * 109.46804 * 210.00199 * 8 6 4 11 11 H 1.48498 * 109.47221 * 329.99732 * 8 6 4 12 12 C 1.50709 * 109.46791 * 120.00018 * 2 1 3 13 13 C 1.33990 * 124.91689 * 239.97418 * 12 2 1 14 14 C 1.46792 * 106.17970 * 179.97438 * 13 12 2 15 15 C 1.39426 * 134.32232 * 179.97438 * 14 13 12 16 16 C 1.37827 * 119.59117 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 119.87665 * 180.02562 * 16 15 14 18 18 C 1.38860 * 120.24310 * 0.28327 * 16 15 14 19 19 C 1.37819 * 120.68152 * 359.45727 * 18 16 15 20 20 C 1.38928 * 119.97346 * 0.51953 * 19 18 16 21 21 O 1.34439 * 124.92458 * 59.97000 * 12 2 1 22 22 H 1.09001 * 109.47050 * 300.00860 * 1 2 3 23 23 H 1.09007 * 109.46724 * 60.00120 * 1 2 3 24 24 H 1.08994 * 109.47612 * 180.02562 * 1 2 3 25 25 H 0.96995 * 120.00310 * 179.97438 * 7 6 4 26 26 H 1.08001 * 126.91517 * 359.97438 * 13 12 2 27 27 H 1.08006 * 120.20609 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.66072 * 179.70058 * 18 16 15 29 29 H 1.07999 * 120.01144 * 180.28665 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1119 11 1 3.6309 -1.7568 -3.7118 12 6 2.0323 -0.7105 1.2306 13 6 2.8063 -0.1566 2.1737 14 6 3.0466 -1.2046 3.1731 15 6 3.7590 -1.2643 4.3701 16 6 3.7834 -2.4395 5.0897 17 17 4.6675 -2.5219 6.5814 18 6 3.1078 -3.5594 4.6232 19 6 2.3960 -3.5108 3.4441 20 6 2.3584 -2.3357 2.7040 21 8 1.7687 -1.9917 1.5411 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 0.7088 1.1610 -3.4844 26 1 3.1785 0.8570 2.1946 27 1 4.2891 -0.3952 4.7308 28 1 3.1372 -4.4769 5.1923 29 1 1.8707 -4.3870 3.0937 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032829.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:00 Heat of formation + Delta-G solvation = -5.904894 kcal Electronic energy + Delta-G solvation = -15294.380237 eV Core-core repulsion = 12594.738486 eV Total energy + Delta-G solvation = -2699.641751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.40835 -39.15081 -37.26828 -36.41958 -33.93340 -32.71533 -31.16379 -29.48147 -27.32330 -24.65501 -23.71150 -22.55056 -21.65958 -18.68479 -18.39550 -17.64281 -17.07929 -16.96851 -16.20234 -15.19131 -15.10959 -14.84745 -14.40990 -14.18277 -14.01231 -13.49268 -13.43010 -12.97570 -12.84539 -12.44168 -12.31301 -12.25680 -12.16107 -11.92659 -11.64873 -11.31172 -10.96057 -10.57386 -9.45502 -9.08454 -8.19072 -6.34834 -0.11041 0.14500 1.07070 1.40025 1.40879 1.47319 1.53884 1.86569 2.39837 2.55131 3.09113 3.46902 3.69050 3.99422 4.23287 4.26451 4.32016 4.60751 4.71907 4.82501 4.91677 4.98098 5.07343 5.12990 5.23908 5.36488 5.46529 5.53810 5.69171 5.89933 6.10612 6.34491 6.68836 7.33581 8.85224 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.044234 B = 0.004786 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.847329 B = 5848.912216 C = 5993.416245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.083 3.917 13 C -0.251 4.251 14 C -0.124 4.124 15 C -0.073 4.073 16 C -0.053 4.053 17 Cl -0.056 7.056 18 C -0.086 4.086 19 C -0.093 4.093 20 C 0.015 3.985 21 O -0.204 6.204 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.268 0.732 26 H 0.168 0.832 27 H 0.150 0.850 28 H 0.176 0.824 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -6.329 14.252 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.198 1.198 12 C 0.035 3.965 13 C -0.270 4.270 14 C -0.126 4.126 15 C -0.091 4.091 16 C -0.080 4.080 17 Cl -0.027 7.027 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.033 4.033 21 O -0.105 6.105 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.185 0.815 27 H 0.168 0.832 28 H 0.193 0.807 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.147 -6.395 14.098 16.027 hybrid contribution 0.314 0.020 -0.911 0.964 sum 4.462 -6.375 13.187 15.312 Atomic orbital electron populations 1.21655 0.96294 0.99608 1.00919 1.17659 0.94052 0.93901 0.85948 0.93261 1.21186 1.32444 1.12828 0.91088 0.93533 1.25633 0.94860 0.95575 1.01591 1.69944 1.36659 1.23450 1.24691 0.85548 0.78770 0.78491 0.78854 1.19923 1.20113 1.19773 1.23382 0.95658 0.80512 0.96925 1.22371 1.07668 1.01241 0.95674 1.19989 1.01485 0.94024 0.97073 1.20463 0.98449 0.98217 0.92005 1.20695 1.00943 0.95576 0.90801 1.98356 1.74296 1.98540 1.31490 1.21040 0.95727 0.98716 0.94964 1.20188 1.02080 0.94848 0.94014 1.20384 0.98074 0.97536 0.87259 1.84015 1.62374 1.28925 1.35213 0.94712 0.90753 0.95318 0.92290 0.81453 0.83184 0.80652 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.12 8.95 71.98 0.64 -5.48 15 2 C 0.10 5.17 2.69 -12.28 -0.03 5.14 15 3 H 0.05 2.58 8.08 -2.39 -0.02 2.56 15 4 C -0.54 -29.66 8.55 25.60 0.22 -29.44 15 5 H 0.05 2.63 7.74 -2.91 -0.02 2.60 15 6 C 0.02 1.27 5.30 84.66 0.45 1.72 15 7 N -0.91 -50.22 11.32 21.45 0.24 -49.98 15 8 Si 0.96 42.87 29.54 68.60 2.03 44.90 15 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 10 H -0.28 -11.89 7.11 99.48 0.71 -11.19 15 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 12 C 0.08 3.77 5.67 24.72 0.14 3.91 15 13 C -0.25 -9.90 10.97 23.54 0.26 -9.64 15 14 C -0.12 -4.41 6.40 -20.21 -0.13 -4.54 15 15 C -0.07 -2.05 9.87 22.46 0.22 -1.83 15 16 C -0.05 -1.30 6.32 22.32 0.14 -1.16 15 17 Cl -0.06 -1.12 28.95 -2.72 -0.08 -1.20 15 18 C -0.09 -1.92 9.79 22.32 0.22 -1.71 15 19 C -0.09 -2.53 10.06 22.34 0.22 -2.31 15 20 C 0.01 0.54 7.41 22.98 0.17 0.71 15 21 O -0.20 -9.04 10.58 -9.25 -0.10 -9.14 15 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.07 3.86 6.07 -2.38 -0.01 3.84 15 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 25 H 0.27 13.96 8.31 -92.71 -0.77 13.19 15 26 H 0.17 5.85 8.06 -2.91 -0.02 5.82 15 27 H 0.15 3.60 8.06 -2.91 -0.02 3.58 15 28 H 0.18 2.61 8.06 -2.91 -0.02 2.58 15 29 H 0.16 3.52 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -59.22 272.40 5.78 -53.44 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.16 Total: 6.60 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 2.52 Total: -44.63 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.24 Total: -49.98 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.10 Total: -9.14 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -59.22 5.78 -53.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032829.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.536 kcal (2) G-P(sol) polarization free energy of solvation -59.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds