Wall clock time and date at job start Mon Mar 30 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.31827 * 124.30156 * 239.72448 * 12 2 1 14 14 C 1.45399 * 114.88976 * 179.84889 * 13 12 2 15 15 C 1.41213 * 129.27330 * 180.15051 * 14 13 12 16 16 C 1.37260 * 120.31870 * 180.28483 * 15 14 13 17 17 F 1.35106 * 119.80431 * 179.97438 * 16 15 14 18 18 C 1.39051 * 120.39146 * 359.97438 * 16 15 14 19 19 C 1.37418 * 120.17367 * 0.02562 * 18 16 15 20 20 C 1.39709 * 111.84732 * 0.42259 * 14 13 12 21 21 S 1.75298 * 124.30185 * 60.02548 * 12 2 1 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.07997 * 122.55630 * 0.02562 * 13 12 2 27 27 H 1.08000 * 119.83845 * 0.24699 * 15 14 13 28 28 H 1.07997 * 119.91496 * 179.97438 * 18 16 15 29 29 H 1.07996 * 119.82062 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 6 2.7975 -0.1546 2.1489 14 6 3.1597 -1.0275 3.2539 15 6 3.9532 -0.7507 4.3887 16 6 4.1842 -1.7254 5.3271 17 9 4.9454 -1.4494 6.4087 18 6 3.6393 -2.9952 5.1713 19 6 2.8644 -3.2844 4.0739 20 6 2.6170 -2.3063 3.1056 21 16 1.6794 -2.3829 1.6189 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 3.1278 0.8718 2.0868 27 1 4.3809 0.2325 4.5185 28 1 3.8264 -3.7564 5.9142 29 1 2.4444 -4.2726 3.9584 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:11 Heat of formation + Delta-G solvation = -17.379735 kcal Electronic energy + Delta-G solvation = -15086.003791 eV Core-core repulsion = 12400.280950 eV Total energy + Delta-G solvation = -2685.722842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.79207 -39.05530 -35.83173 -33.46779 -30.96467 -30.54013 -27.92354 -25.27748 -23.36602 -22.93822 -20.92417 -19.58538 -17.63475 -16.68342 -16.34241 -16.09834 -15.49679 -14.87344 -14.51843 -13.92776 -13.54332 -13.21488 -13.09061 -12.75340 -12.65557 -11.74090 -11.57610 -11.18782 -11.04385 -10.94487 -10.61522 -10.46346 -10.21762 -10.07025 -9.80336 -9.37109 -9.13812 -8.50525 -7.94183 -7.28158 -6.14388 -4.22860 1.01199 1.21380 2.00436 2.61784 2.75059 3.25742 3.30191 3.33702 3.77044 4.30772 4.34562 4.75824 4.95268 5.17278 5.25171 5.37732 5.79391 5.88863 5.98151 6.15506 6.22561 6.31994 6.60435 6.69447 6.81364 6.93362 7.00518 7.06716 7.50899 7.70928 7.91662 8.17920 8.78660 9.43101 10.91284 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.039818 B = 0.005409 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.039551 B = 5174.999734 C = 5252.284596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.050 0.950 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.065 4.065 13 C -0.183 4.183 14 C -0.027 4.027 15 C -0.127 4.127 16 C 0.091 3.909 17 F -0.145 7.145 18 C -0.158 4.158 19 C -0.048 4.048 20 C -0.176 4.176 21 S 0.106 5.894 22 H 0.031 0.969 23 H 0.014 0.986 24 H 0.091 0.909 25 H 0.264 0.736 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -5.121 11.504 12.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 H 0.068 0.932 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.201 1.201 12 C -0.181 4.181 13 C -0.211 4.211 14 C -0.037 4.037 15 C -0.147 4.147 16 C 0.070 3.930 17 F -0.124 7.124 18 C -0.179 4.179 19 C -0.071 4.071 20 C -0.292 4.292 21 S 0.372 5.628 22 H 0.050 0.950 23 H 0.033 0.967 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.159 0.841 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.689 -6.072 10.608 12.339 hybrid contribution 1.352 0.756 0.028 1.549 sum 3.041 -5.316 10.636 12.274 Atomic orbital electron populations 1.21844 0.96888 0.99702 1.00915 1.17723 0.93186 0.95324 0.86409 0.93179 1.21041 1.32169 1.12747 0.89615 0.92102 1.24928 0.94759 0.94887 0.99026 1.69855 1.36182 1.22584 1.23921 0.86580 0.79374 0.79812 0.81886 1.20032 1.21139 1.20082 1.24984 0.97594 0.95541 1.00003 1.20729 1.04994 1.00995 0.94368 1.19107 0.97170 0.92620 0.94786 1.20781 1.00971 0.99438 0.93550 1.17252 0.95694 0.94597 0.85502 1.91471 1.73668 1.94382 1.52847 1.20817 1.01441 0.95722 0.99950 1.20241 0.97114 0.97938 0.91759 1.23015 1.06553 0.97750 1.01879 1.84229 1.52540 1.12144 1.13920 0.95005 0.96733 0.89044 0.92606 0.84085 0.84810 0.84697 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.88 37.16 0.33 -2.80 15 2 C 0.09 2.24 2.63 -92.92 -0.24 2.00 15 3 H 0.05 1.28 8.06 -51.93 -0.42 0.86 15 4 C -0.52 -13.56 8.42 -34.44 -0.29 -13.85 15 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 6 C 0.07 1.76 5.31 -17.82 -0.09 1.66 15 7 N -0.89 -24.19 11.33 55.43 0.63 -23.56 15 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 15 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 12 C -0.07 -1.36 4.95 -36.20 -0.18 -1.54 15 13 C -0.18 -3.48 10.16 -38.63 -0.39 -3.87 15 14 C -0.03 -0.47 6.04 -105.37 -0.64 -1.11 15 15 C -0.13 -1.92 10.07 -38.81 -0.39 -2.31 15 16 C 0.09 1.30 7.27 -39.64 -0.29 1.01 15 17 F -0.14 -2.01 17.26 2.25 0.04 -1.97 15 18 C -0.16 -2.03 10.01 -39.58 -0.40 -2.43 15 19 C -0.05 -0.67 10.06 -39.28 -0.40 -1.06 15 20 C -0.18 -2.98 6.48 -38.43 -0.25 -3.23 15 21 S 0.11 1.98 22.74 -107.50 -2.44 -0.47 15 22 H 0.03 0.70 7.93 -51.93 -0.41 0.29 15 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 24 H 0.09 2.30 6.08 -51.93 -0.32 1.99 15 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 26 H 0.14 2.47 8.06 -52.49 -0.42 2.05 15 27 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 28 H 0.14 1.35 8.06 -52.49 -0.42 0.92 15 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 270.93 15.07 4.08 4.08 Total: -1.00 -26.88 270.93 -8.74 -35.62 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -2.80 Total: -1.80 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -3.23 Total: -27.51 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.63 Total: -23.56 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.44 Total: -0.47 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.88 -8.74 -35.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.244 kcal (2) G-P(sol) polarization free energy of solvation -26.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds