Wall clock time and date at job start Mon Mar 30 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.31827 * 124.30156 * 239.72448 * 12 2 1 14 14 C 1.45399 * 114.88976 * 179.84889 * 13 12 2 15 15 C 1.41213 * 129.27330 * 180.15051 * 14 13 12 16 16 C 1.37260 * 120.31870 * 180.28483 * 15 14 13 17 17 F 1.35106 * 119.80431 * 179.97438 * 16 15 14 18 18 C 1.39051 * 120.39146 * 359.97438 * 16 15 14 19 19 C 1.37418 * 120.17367 * 0.02562 * 18 16 15 20 20 C 1.39709 * 111.84732 * 0.42259 * 14 13 12 21 21 S 1.75298 * 124.30185 * 60.02548 * 12 2 1 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.07997 * 122.55630 * 0.02562 * 13 12 2 27 27 H 1.08000 * 119.83845 * 0.24699 * 15 14 13 28 28 H 1.07997 * 119.91496 * 179.97438 * 18 16 15 29 29 H 1.07996 * 119.82062 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 6 2.7975 -0.1546 2.1489 14 6 3.1597 -1.0275 3.2539 15 6 3.9532 -0.7507 4.3887 16 6 4.1842 -1.7254 5.3271 17 9 4.9454 -1.4494 6.4087 18 6 3.6393 -2.9952 5.1713 19 6 2.8644 -3.2844 4.0739 20 6 2.6170 -2.3063 3.1056 21 16 1.6794 -2.3829 1.6189 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 3.1278 0.8718 2.0868 27 1 4.3809 0.2325 4.5185 28 1 3.8264 -3.7564 5.9142 29 1 2.4444 -4.2726 3.9584 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:11 Heat of formation + Delta-G solvation = -29.280464 kcal Electronic energy + Delta-G solvation = -15086.519846 eV Core-core repulsion = 12400.280950 eV Total energy + Delta-G solvation = -2686.238896 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.89668 -40.29771 -37.44109 -35.13505 -32.70279 -31.72933 -29.35814 -27.27337 -24.78386 -24.18554 -22.44496 -21.07837 -18.99196 -18.27488 -17.81529 -17.38715 -16.60299 -16.59842 -15.94121 -15.29877 -14.90008 -14.62854 -14.54366 -14.28106 -13.98318 -13.47896 -13.11833 -12.88907 -12.84750 -12.42612 -12.23289 -12.17768 -11.78830 -11.64911 -11.49561 -11.01319 -10.58089 -10.51495 -9.31271 -8.63602 -8.15020 -6.29952 -0.24640 0.04544 0.63427 1.18755 1.35058 1.42720 1.43614 1.51250 2.41118 2.55760 3.13269 3.16091 3.61633 3.85994 4.07373 4.24930 4.37457 4.67539 4.74852 4.81521 4.89217 4.96465 5.06125 5.10938 5.12826 5.33842 5.41196 5.56172 5.76827 5.82303 5.96214 6.22868 6.76427 7.38617 8.89467 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.039818 B = 0.005409 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.039551 B = 5174.999734 C = 5252.284596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.095 3.905 3 H 0.022 0.978 4 C -0.530 4.530 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.273 1.273 12 C -0.106 4.106 13 C -0.172 4.172 14 C -0.051 4.051 15 C -0.130 4.130 16 C 0.091 3.909 17 F -0.141 7.141 18 C -0.137 4.137 19 C -0.049 4.049 20 C -0.180 4.180 21 S 0.099 5.901 22 H 0.032 0.968 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.264 0.736 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.174 0.826 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 -6.860 13.267 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.075 3.925 3 H 0.040 0.960 4 C -0.568 4.568 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.198 1.198 12 C -0.221 4.221 13 C -0.200 4.200 14 C -0.060 4.060 15 C -0.150 4.150 16 C 0.070 3.930 17 F -0.119 7.119 18 C -0.159 4.159 19 C -0.071 4.071 20 C -0.295 4.295 21 S 0.364 5.636 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.191 0.809 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.639 -7.810 12.378 14.872 hybrid contribution 1.143 1.281 -0.319 1.746 sum 3.782 -6.529 12.058 14.225 Atomic orbital electron populations 1.21674 0.96671 0.99536 1.00377 1.17478 0.93446 0.94035 0.87512 0.96001 1.21307 1.31958 1.12648 0.90890 0.92736 1.25656 0.95021 0.95568 1.01670 1.69974 1.37116 1.23694 1.24406 0.85680 0.78809 0.78941 0.78728 1.19460 1.20686 1.19813 1.24600 1.00249 0.97260 1.00028 1.20928 1.03329 1.01399 0.94355 1.19084 0.98922 0.92687 0.95325 1.20928 1.00456 1.00637 0.92985 1.17392 0.95444 0.94964 0.85227 1.91492 1.73511 1.94418 1.52503 1.21244 0.99074 0.95772 0.99764 1.20623 0.96958 0.98559 0.90948 1.23184 1.06282 0.98483 1.01597 1.84010 1.53545 1.10501 1.15584 0.94859 0.95168 0.91488 0.92626 0.83743 0.83423 0.80908 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.88 71.98 0.64 -5.29 15 2 C 0.10 4.73 2.63 -12.28 -0.03 4.70 15 3 H 0.02 1.18 8.06 -2.39 -0.02 1.16 15 4 C -0.53 -28.48 8.42 25.60 0.22 -28.26 15 5 H 0.05 2.93 7.74 -2.91 -0.02 2.90 15 6 C 0.02 1.10 5.31 84.65 0.45 1.55 15 7 N -0.91 -51.07 11.33 21.45 0.24 -50.83 15 8 Si 0.95 42.67 29.54 68.60 2.03 44.70 15 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 12 C -0.11 -4.50 4.95 24.90 0.12 -4.38 15 13 C -0.17 -6.57 10.16 23.33 0.24 -6.33 15 14 C -0.05 -1.71 6.04 -20.35 -0.12 -1.83 15 15 C -0.13 -3.62 10.07 22.77 0.23 -3.39 15 16 C 0.09 2.27 7.27 22.23 0.16 2.43 15 17 F -0.14 -3.38 17.26 44.97 0.78 -2.61 15 18 C -0.14 -2.89 10.01 22.27 0.22 -2.67 15 19 C -0.05 -1.16 10.06 22.46 0.23 -0.94 15 20 C -0.18 -5.74 6.48 23.01 0.15 -5.59 15 21 S 0.10 3.63 22.74 -56.49 -1.28 2.35 15 22 H 0.03 1.51 7.93 -2.39 -0.02 1.49 15 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.07 3.50 6.08 -2.38 -0.01 3.48 15 25 H 0.26 14.09 8.31 -92.71 -0.77 13.32 15 26 H 0.14 5.19 8.06 -2.91 -0.02 5.17 15 27 H 0.15 3.60 8.06 -2.91 -0.02 3.57 15 28 H 0.17 2.38 8.06 -2.91 -0.02 2.36 15 29 H 0.16 2.86 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -58.20 270.93 5.42 -52.78 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.16 Total: 3.61 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 2.50 Total: -50.00 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.24 Total: -50.83 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.28 Total: 2.35 kcal Total: -58.20 5.42 -52.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.502 kcal (2) G-P(sol) polarization free energy of solvation -58.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds