Wall clock time and date at job start Mon Mar 30 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00267 * 2 1 4 4 H 1.48495 * 109.47032 * 85.13628 * 3 2 1 5 5 H 1.48502 * 109.46996 * 325.13695 * 3 2 1 6 6 H 1.48503 * 109.47062 * 205.14019 * 3 2 1 7 7 C 1.37880 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00110 * 172.96918 * 7 2 1 9 9 C 1.50696 * 119.99982 * 352.96904 * 7 2 1 10 10 H 1.08999 * 109.47572 * 57.07376 * 9 7 2 11 11 N 1.46906 * 109.47149 * 297.07001 * 9 7 2 12 12 C 1.50709 * 109.47206 * 177.07645 * 9 7 2 13 13 C 1.37756 * 119.65561 * 260.00081 * 12 9 7 14 14 C 1.39095 * 119.94627 * 179.97438 * 13 12 9 15 15 N 1.37709 * 133.42150 * 180.02562 * 14 13 12 16 16 H 0.96995 * 125.06028 * 359.95437 * 15 14 13 17 17 C 1.36857 * 109.87448 * 179.97438 * 15 14 13 18 18 C 1.34225 * 109.92789 * 359.97438 * 17 15 14 19 19 C 1.40664 * 119.43262 * 359.97438 * 14 13 12 20 20 C 1.39696 * 119.93815 * 0.03350 * 19 14 13 21 21 Cl 1.73602 * 120.18363 * 179.97438 * 20 19 14 22 22 C 1.37757 * 119.63027 * 359.68222 * 20 19 14 23 23 H 0.96996 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99763 * 306.33557 * 11 9 7 25 25 H 1.00900 * 110.99836 * 70.28603 * 11 9 7 26 26 H 1.08004 * 120.02958 * 359.94677 * 13 12 9 27 27 H 1.08000 * 125.03235 * 180.02562 * 17 15 14 28 28 H 1.07997 * 126.50422 * 179.97438 * 18 17 15 29 29 H 1.08002 * 119.81840 * 180.27943 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3939 2.1057 1.3950 5 1 1.5018 2.6208 -0.8003 6 1 3.5944 1.4126 -0.5948 7 6 2.0045 -1.1941 -0.0005 8 1 3.0785 -1.1976 -0.1150 9 6 1.2595 -2.4943 0.1586 10 1 0.5064 -2.5799 -0.6248 11 7 0.6043 -2.5255 1.4731 12 6 2.2277 -3.6444 0.0526 13 6 2.3327 -4.3400 -1.1318 14 6 3.2247 -5.4021 -1.2365 15 7 3.5505 -6.2675 -2.2570 16 1 3.1586 -6.2555 -3.1441 17 6 4.5092 -7.1471 -1.8327 18 6 4.8322 -6.8908 -0.5554 19 6 4.0132 -5.7545 -0.1263 20 6 3.8951 -5.0394 1.0680 21 17 4.8646 -5.4693 2.4423 22 6 3.0092 -3.9874 1.1471 23 1 -0.4849 0.8400 -0.0004 24 1 1.2673 -2.3448 2.2120 25 1 -0.1645 -1.8730 1.5096 26 1 1.7225 -4.0612 -1.9783 27 1 4.9423 -7.9308 -2.4366 28 1 5.5577 -7.4220 0.0428 29 1 2.9187 -3.4296 2.0674 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261043223.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:39 Heat of formation + Delta-G solvation = 22.526011 kcal Electronic energy + Delta-G solvation = -15477.322011 eV Core-core repulsion = 12811.205868 eV Total energy + Delta-G solvation = -2666.116143 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.05295 -38.71623 -37.42525 -35.72198 -33.33076 -32.44009 -30.17600 -29.58879 -27.70371 -24.43127 -23.73198 -21.58965 -21.28835 -18.90749 -18.41245 -17.30058 -16.97117 -16.40485 -15.48132 -15.37457 -15.20220 -15.01254 -14.77397 -14.06569 -13.61785 -13.47681 -13.23456 -12.94718 -12.88508 -12.57601 -12.24301 -12.10421 -11.91431 -11.58932 -11.42129 -10.67605 -10.40085 -9.26748 -9.06133 -8.50505 -8.11905 -6.36265 0.13317 0.69840 1.27148 1.36877 1.40041 1.49582 1.89091 2.31028 2.37698 2.90932 3.06096 3.89860 4.05329 4.20229 4.33401 4.48327 4.65176 4.75444 4.87387 4.93721 5.11857 5.28459 5.44564 5.64653 5.69268 5.80045 5.94107 6.07394 6.21512 6.66045 6.78974 6.85123 7.07605 7.36779 8.82604 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025255 B = 0.006646 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.443635 B = 4211.910017 C = 4672.159810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.028 3.972 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.045 0.955 9 C 0.248 3.752 10 H 0.021 0.979 11 N -0.839 5.839 12 C -0.022 4.022 13 C -0.142 4.142 14 C 0.097 3.903 15 N -0.587 5.587 16 H 0.430 0.570 17 C 0.073 3.927 18 C -0.224 4.224 19 C -0.136 4.136 20 C -0.003 4.003 21 Cl -0.071 7.071 22 C -0.124 4.124 23 H 0.267 0.733 24 H 0.321 0.679 25 H 0.339 0.661 26 H 0.122 0.878 27 H 0.220 0.780 28 H 0.159 0.841 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -12.700 -3.053 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.597 4.597 8 H 0.063 0.937 9 C 0.138 3.862 10 H 0.039 0.961 11 N -0.366 5.366 12 C -0.024 4.024 13 C -0.163 4.163 14 C -0.011 4.011 15 N -0.191 5.191 16 H 0.270 0.730 17 C -0.053 4.053 18 C -0.249 4.249 19 C -0.142 4.142 20 C -0.030 4.030 21 Cl -0.042 7.042 22 C -0.144 4.144 23 H 0.076 0.924 24 H 0.131 0.869 25 H 0.152 0.848 26 H 0.140 0.860 27 H 0.237 0.763 28 H 0.176 0.824 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.088 -13.432 -3.250 16.012 hybrid contribution 0.283 2.295 -0.081 2.313 sum 8.371 -11.137 -3.330 14.325 Atomic orbital electron populations 1.69957 1.06864 1.27958 1.50368 1.25668 0.95632 1.02082 0.93961 0.85605 0.78647 0.79505 0.78227 1.19977 1.20696 1.19953 1.21957 0.93808 0.92321 1.51564 0.93652 1.17751 0.90219 0.88804 0.89407 0.96119 1.59451 1.14193 1.58076 1.04835 1.19829 0.95693 0.94833 0.92083 1.19962 1.01312 0.96324 0.98693 1.18011 0.98855 0.94769 0.89446 1.41828 1.36520 1.27709 1.13067 0.73008 1.22498 0.91643 0.95521 0.95683 1.21838 1.05985 1.00237 0.96829 1.19155 1.02107 1.00647 0.92241 1.20269 0.96847 0.97775 0.88138 1.98297 1.70283 1.92770 1.42891 1.20561 0.96891 0.97285 0.99646 0.92358 0.86859 0.84843 0.86023 0.76321 0.82372 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.26 12.11 21.45 0.26 -50.00 15 2 C 0.03 1.47 5.35 84.66 0.45 1.92 15 3 Si 0.95 42.86 29.54 68.60 2.03 44.88 15 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 7 C -0.56 -30.13 8.61 25.60 0.22 -29.91 15 8 H 0.05 2.52 7.75 -2.91 -0.02 2.49 15 9 C 0.25 12.53 2.80 43.42 0.12 12.66 15 10 H 0.02 1.16 7.98 -2.39 -0.02 1.14 15 11 N -0.84 -40.14 8.91 -174.94 -1.56 -41.70 15 12 C -0.02 -0.98 4.90 -19.84 -0.10 -1.08 15 13 C -0.14 -5.59 9.67 22.36 0.22 -5.37 15 14 C 0.10 3.26 7.27 39.02 0.28 3.55 15 15 N -0.59 -13.50 6.07 -187.61 -1.14 -14.64 15 16 H 0.43 7.00 8.96 -92.71 -0.83 6.17 15 17 C 0.07 1.38 11.82 82.99 0.98 2.36 15 18 C -0.22 -5.71 11.00 23.51 0.26 -5.45 15 19 C -0.14 -4.65 6.21 -20.18 -0.13 -4.77 15 20 C 0.00 -0.12 6.35 22.51 0.14 0.03 15 21 Cl -0.07 -2.25 28.91 -2.72 -0.08 -2.33 15 22 C -0.12 -5.15 9.06 22.29 0.20 -4.95 15 23 H 0.27 13.99 8.31 -92.71 -0.77 13.22 15 24 H 0.32 14.71 7.53 -89.69 -0.68 14.03 15 25 H 0.34 17.13 7.77 -89.69 -0.70 16.44 15 26 H 0.12 4.58 8.02 -2.91 -0.02 4.55 15 27 H 0.22 1.76 8.06 -2.91 -0.02 1.74 15 28 H 0.16 3.42 8.06 -2.91 -0.02 3.39 15 29 H 0.12 5.09 6.78 -2.91 -0.02 5.07 15 Total: -1.00 -62.31 269.12 1.18 -61.13 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.98 Total: 33.68 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 2.66 Total: -31.02 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -2.44 Total: -106.34 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.08 Total: -2.33 kcal Total: -62.31 1.18 -61.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043223.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.657 kcal (2) G-P(sol) polarization free energy of solvation -62.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds