Wall clock time and date at job start Mon Mar 30 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00353 * 2 1 4 4 H 1.48504 * 109.46930 * 270.00310 * 3 2 1 5 5 H 1.48494 * 109.47010 * 29.99952 * 3 2 1 6 6 H 1.48498 * 109.47155 * 150.00070 * 3 2 1 7 7 C 1.37883 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46872 * 299.99670 * 9 7 2 11 11 N 1.46896 * 109.47174 * 60.00009 * 9 7 2 12 12 C 1.50698 * 109.46996 * 179.97438 * 9 7 2 13 13 C 1.37762 * 119.66229 * 100.01977 * 12 9 7 14 14 C 1.39087 * 119.94308 * 179.97438 * 13 12 9 15 15 N 1.37715 * 133.41602 * 180.02562 * 14 13 12 16 16 H 0.97008 * 125.06387 * 0.02562 * 15 14 13 17 17 C 1.36853 * 109.87506 * 179.97438 * 15 14 13 18 18 C 1.34218 * 109.93177 * 359.97438 * 17 15 14 19 19 C 1.40661 * 119.44399 * 359.97438 * 14 13 12 20 20 C 1.39704 * 119.93244 * 359.73194 * 19 14 13 21 21 Cl 1.73599 * 120.18414 * 180.29000 * 20 19 14 22 22 C 1.37757 * 119.62866 * 0.54596 * 20 19 14 23 23 H 0.97002 * 120.00212 * 359.97438 * 1 2 3 24 24 H 1.00907 * 111.00205 * 59.99962 * 11 9 7 25 25 H 1.00905 * 111.00013 * 183.95236 * 11 9 7 26 26 H 1.08003 * 120.02251 * 0.02562 * 13 12 9 27 27 H 1.08004 * 125.03615 * 179.97438 * 17 15 14 28 28 H 1.07995 * 126.50821 * 179.97438 * 18 17 15 29 29 H 1.08002 * 119.81713 * 179.73295 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 0.4058 -2.5767 -1.1996 12 6 2.2301 -3.6447 -0.0018 13 6 2.5157 -4.2988 1.1765 14 6 3.4181 -5.3571 1.1820 15 7 3.8974 -6.1873 2.1708 16 1 3.6432 -6.1445 3.1060 17 6 4.7847 -7.0822 1.6373 18 6 4.9098 -6.8713 0.3177 19 6 4.0311 -5.7493 -0.0218 20 6 3.7264 -5.0800 -1.2096 21 17 4.4734 -5.5634 -2.7002 22 6 2.8339 -4.0308 -1.1904 23 1 -0.4850 0.8400 0.0004 24 1 0.9635 -2.5251 -2.0390 25 1 -0.1582 -3.4134 -1.1911 26 1 2.0385 -3.9905 2.0951 27 1 5.3070 -7.8452 2.1955 28 1 5.5393 -7.4234 -0.3644 29 1 2.5995 -3.5085 -2.1062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261043226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:40 Heat of formation + Delta-G solvation = 49.528859 kcal Electronic energy + Delta-G solvation = -15482.226943 eV Core-core repulsion = 12817.281731 eV Total energy + Delta-G solvation = -2664.945212 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.90424 -37.36896 -36.09772 -33.76314 -31.61090 -31.09479 -28.91758 -28.10033 -25.81077 -22.64015 -22.43222 -20.47356 -19.88301 -17.65118 -16.40482 -15.82254 -15.22646 -14.57599 -14.28584 -14.03046 -13.93989 -13.78342 -13.01729 -12.46463 -12.40811 -12.22578 -11.62715 -11.28120 -10.91994 -10.84481 -10.68213 -10.51978 -10.47328 -9.78414 -9.32397 -9.06580 -8.43527 -7.81294 -7.30720 -7.07709 -5.88492 -4.03550 1.40400 2.01238 2.56022 2.93075 3.33865 3.34673 3.41364 3.44913 4.23209 4.50999 4.91899 5.26865 5.36003 5.43658 5.58342 5.71976 5.90607 6.11826 6.21416 6.29212 6.35984 6.78245 6.93639 6.95305 6.99343 7.43828 7.53056 7.72058 7.90637 8.15851 8.61629 8.99373 9.13547 9.65250 11.15650 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.006640 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.366928 B = 4215.592153 C = 4655.321009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.884 3.116 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.257 3.743 10 H 0.049 0.951 11 N -0.809 5.809 12 C -0.041 4.041 13 C -0.134 4.134 14 C 0.111 3.889 15 N -0.599 5.599 16 H 0.414 0.586 17 C 0.038 3.962 18 C -0.196 4.196 19 C -0.125 4.125 20 C 0.008 3.992 21 Cl -0.088 7.088 22 C -0.124 4.124 23 H 0.256 0.744 24 H 0.319 0.681 25 H 0.299 0.701 26 H 0.122 0.878 27 H 0.166 0.834 28 H 0.142 0.858 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -13.000 1.991 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.147 3.853 10 H 0.067 0.933 11 N -0.334 5.334 12 C -0.045 4.045 13 C -0.155 4.155 14 C 0.004 3.996 15 N -0.203 5.203 16 H 0.250 0.750 17 C -0.088 4.088 18 C -0.222 4.222 19 C -0.130 4.130 20 C -0.020 4.020 21 Cl -0.059 7.059 22 C -0.144 4.144 23 H 0.066 0.934 24 H 0.132 0.868 25 H 0.110 0.890 26 H 0.140 0.860 27 H 0.183 0.817 28 H 0.160 0.840 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.632 -12.256 2.242 14.115 hybrid contribution 1.130 -0.009 0.092 1.134 sum 7.763 -12.265 2.335 14.701 Atomic orbital electron populations 1.70100 1.05660 1.25753 1.46595 1.24933 0.94637 0.98522 0.94141 0.86746 0.79976 0.83926 0.78147 1.20644 1.21315 1.20019 1.20819 0.92294 0.89286 1.54572 0.92720 1.18232 0.87303 0.88533 0.91222 0.93288 1.59214 1.27928 1.41995 1.04305 1.21483 0.96723 0.95878 0.90411 1.20057 1.00277 0.95766 0.99433 1.18184 0.98810 0.94986 0.87604 1.41741 1.39401 1.29486 1.09632 0.74975 1.21671 0.96323 0.96275 0.94506 1.21552 1.05018 1.00819 0.94786 1.18708 1.02639 1.00130 0.91482 1.20223 0.98717 0.97980 0.85036 1.98311 1.81925 1.91540 1.34124 1.20728 0.97683 0.96228 0.99717 0.93414 0.86827 0.89040 0.86017 0.81681 0.84032 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.19 12.77 55.43 0.71 -23.49 15 2 C 0.08 2.32 5.39 -17.82 -0.10 2.22 15 3 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.53 -14.28 8.70 -34.44 -0.30 -14.58 15 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.26 6.15 2.84 -70.02 -0.20 5.96 15 10 H 0.05 1.28 7.98 -51.93 -0.41 0.86 15 11 N -0.81 -18.50 8.36 -6.65 -0.06 -18.56 15 12 C -0.04 -0.84 4.89 -104.59 -0.51 -1.35 15 13 C -0.13 -2.50 9.67 -39.44 -0.38 -2.88 15 14 C 0.11 1.87 7.27 -83.99 -0.61 1.26 15 15 N -0.60 -7.64 6.07 -10.65 -0.06 -7.70 15 16 H 0.41 3.94 8.96 -40.82 -0.37 3.58 15 17 C 0.04 0.44 11.81 -16.73 -0.20 0.24 15 18 C -0.20 -2.76 11.00 -37.67 -0.41 -3.17 15 19 C -0.12 -2.15 6.21 -105.11 -0.65 -2.81 15 20 C 0.01 0.14 6.35 -39.21 -0.25 -0.11 15 21 Cl -0.09 -1.39 28.91 -51.86 -1.50 -2.89 15 22 C -0.12 -2.41 9.04 -39.55 -0.36 -2.76 15 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 24 H 0.32 6.99 7.30 -39.29 -0.29 6.71 15 25 H 0.30 6.13 9.06 -39.29 -0.36 5.77 15 26 H 0.12 2.13 8.02 -52.48 -0.42 1.71 15 27 H 0.17 1.20 8.06 -52.48 -0.42 0.78 15 28 H 0.14 1.74 8.06 -52.49 -0.42 1.32 15 29 H 0.13 2.50 6.62 -52.49 -0.35 2.15 15 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -30.21 270.25 -8.41 -38.62 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -2.58 Total: 11.76 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.97 Total: -17.98 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.59 Total: -49.75 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.21 -8.41 -38.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.149 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds