Wall clock time and date at job start Mon Mar 30 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00353 * 2 1 4 4 H 1.48504 * 109.46930 * 270.00310 * 3 2 1 5 5 H 1.48494 * 109.47010 * 29.99952 * 3 2 1 6 6 H 1.48498 * 109.47155 * 150.00070 * 3 2 1 7 7 C 1.37883 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46872 * 299.99670 * 9 7 2 11 11 N 1.46896 * 109.47174 * 60.00009 * 9 7 2 12 12 C 1.50698 * 109.46996 * 179.97438 * 9 7 2 13 13 C 1.37762 * 119.66229 * 100.01977 * 12 9 7 14 14 C 1.39087 * 119.94308 * 179.97438 * 13 12 9 15 15 N 1.37715 * 133.41602 * 180.02562 * 14 13 12 16 16 H 0.97008 * 125.06387 * 0.02562 * 15 14 13 17 17 C 1.36853 * 109.87506 * 179.97438 * 15 14 13 18 18 C 1.34218 * 109.93177 * 359.97438 * 17 15 14 19 19 C 1.40661 * 119.44399 * 359.97438 * 14 13 12 20 20 C 1.39704 * 119.93244 * 359.73194 * 19 14 13 21 21 Cl 1.73599 * 120.18414 * 180.29000 * 20 19 14 22 22 C 1.37757 * 119.62866 * 0.54596 * 20 19 14 23 23 H 0.97002 * 120.00212 * 359.97438 * 1 2 3 24 24 H 1.00907 * 111.00205 * 59.99962 * 11 9 7 25 25 H 1.00905 * 111.00013 * 183.95236 * 11 9 7 26 26 H 1.08003 * 120.02251 * 0.02562 * 13 12 9 27 27 H 1.08004 * 125.03615 * 179.97438 * 17 15 14 28 28 H 1.07995 * 126.50821 * 179.97438 * 18 17 15 29 29 H 1.08002 * 119.81713 * 179.73295 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 0.4058 -2.5767 -1.1996 12 6 2.2301 -3.6447 -0.0018 13 6 2.5157 -4.2988 1.1765 14 6 3.4181 -5.3571 1.1820 15 7 3.8974 -6.1873 2.1708 16 1 3.6432 -6.1445 3.1060 17 6 4.7847 -7.0822 1.6373 18 6 4.9098 -6.8713 0.3177 19 6 4.0311 -5.7493 -0.0218 20 6 3.7264 -5.0800 -1.2096 21 17 4.4734 -5.5634 -2.7002 22 6 2.8339 -4.0308 -1.1904 23 1 -0.4850 0.8400 0.0004 24 1 0.9635 -2.5251 -2.0390 25 1 -0.1582 -3.4134 -1.1911 26 1 2.0385 -3.9905 2.0951 27 1 5.3070 -7.8452 2.1955 28 1 5.5393 -7.4234 -0.3644 29 1 2.5995 -3.5085 -2.1062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261043226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:40 Heat of formation + Delta-G solvation = 29.657177 kcal Electronic energy + Delta-G solvation = -15483.088644 eV Core-core repulsion = 12817.281731 eV Total energy + Delta-G solvation = -2665.806913 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.10577 -38.80343 -37.46733 -35.49012 -33.42578 -32.49161 -30.22168 -29.51838 -27.75066 -24.31554 -23.77577 -21.63773 -21.34647 -18.94945 -18.33438 -17.19171 -16.76262 -16.47903 -15.63067 -15.49594 -15.36834 -15.22985 -14.35371 -14.10272 -13.79770 -13.55262 -13.28227 -12.93583 -12.73238 -12.55545 -12.21476 -12.08511 -11.91076 -11.59037 -11.10053 -10.54456 -10.42667 -9.21292 -8.87904 -8.51823 -7.96363 -6.17943 0.07518 0.61632 1.21863 1.43641 1.45434 1.54323 1.84882 2.27909 2.47563 2.84592 3.27048 3.84329 4.05078 4.17737 4.30331 4.42840 4.48348 4.70673 4.78745 4.90942 5.07357 5.27777 5.38207 5.65361 5.74958 5.77008 5.84080 6.13081 6.19462 6.66448 6.74998 7.10614 7.27466 7.54102 9.06264 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.006640 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.366928 B = 4215.592153 C = 4655.321009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.038 3.962 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.043 0.957 9 C 0.264 3.736 10 H 0.019 0.981 11 N -0.818 5.818 12 C -0.067 4.067 13 C -0.136 4.136 14 C 0.097 3.903 15 N -0.586 5.586 16 H 0.431 0.569 17 C 0.074 3.926 18 C -0.225 4.225 19 C -0.136 4.136 20 C 0.000 4.000 21 Cl -0.071 7.071 22 C -0.136 4.136 23 H 0.256 0.744 24 H 0.323 0.677 25 H 0.312 0.688 26 H 0.124 0.876 27 H 0.220 0.780 28 H 0.159 0.841 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.998 -14.733 2.897 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.166 4.166 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.061 0.939 9 C 0.154 3.846 10 H 0.037 0.963 11 N -0.345 5.345 12 C -0.071 4.071 13 C -0.157 4.157 14 C -0.011 4.011 15 N -0.191 5.191 16 H 0.271 0.729 17 C -0.052 4.052 18 C -0.249 4.249 19 C -0.141 4.141 20 C -0.027 4.027 21 Cl -0.042 7.042 22 C -0.156 4.156 23 H 0.065 0.935 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.142 0.858 27 H 0.237 0.763 28 H 0.176 0.824 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.528 -14.001 3.170 16.698 hybrid contribution 0.631 0.353 -0.131 0.735 sum 9.159 -13.648 3.038 16.715 Atomic orbital electron populations 1.70214 1.06897 1.26373 1.47889 1.25619 0.95392 1.01553 0.93991 0.85791 0.78776 0.80252 0.78076 1.20410 1.20803 1.19770 1.21087 0.91940 0.91007 1.53948 0.93873 1.17844 0.87451 0.89042 0.90248 0.96325 1.59044 1.28317 1.42982 1.04188 1.21022 0.97874 0.96289 0.91956 1.20056 1.00600 0.96284 0.98772 1.18106 0.98776 0.95210 0.89003 1.41858 1.38758 1.28469 1.09983 0.72935 1.22511 0.93693 0.95082 0.93947 1.21847 1.05914 1.00757 0.96424 1.19172 1.02938 1.00879 0.91139 1.20272 0.98467 0.97679 0.86313 1.98305 1.81472 1.91280 1.33113 1.20594 0.98791 0.97268 0.98931 0.93519 0.86412 0.87700 0.85817 0.76308 0.82389 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.31 12.77 21.45 0.27 -51.03 15 2 C 0.04 2.14 5.39 84.66 0.46 2.59 15 3 Si 0.95 44.14 29.54 68.60 2.03 46.16 15 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.54 -29.96 8.70 25.60 0.22 -29.73 15 8 H 0.04 2.43 7.74 -2.92 -0.02 2.41 15 9 C 0.26 13.18 2.84 43.42 0.12 13.31 15 10 H 0.02 1.03 7.98 -2.39 -0.02 1.01 15 11 N -0.82 -38.84 8.36 -174.95 -1.46 -40.30 15 12 C -0.07 -2.87 4.89 -19.84 -0.10 -2.97 15 13 C -0.14 -5.11 9.67 22.36 0.22 -4.90 15 14 C 0.10 3.13 7.27 39.01 0.28 3.41 15 15 N -0.59 -12.84 6.07 -187.62 -1.14 -13.98 15 16 H 0.43 6.56 8.96 -92.70 -0.83 5.73 15 17 C 0.07 1.33 11.81 82.99 0.98 2.31 15 18 C -0.22 -5.52 11.00 23.51 0.26 -5.26 15 19 C -0.14 -4.47 6.21 -20.18 -0.13 -4.59 15 20 C 0.00 -0.01 6.35 22.51 0.14 0.14 15 21 Cl -0.07 -2.16 28.91 -2.72 -0.08 -2.24 15 22 C -0.14 -5.40 9.04 22.29 0.20 -5.20 15 23 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 24 H 0.32 14.71 7.30 -89.69 -0.65 14.06 15 25 H 0.31 13.26 9.06 -89.69 -0.81 12.44 15 26 H 0.12 4.43 8.02 -2.91 -0.02 4.41 15 27 H 0.22 1.60 8.06 -2.91 -0.02 1.57 15 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 15 29 H 0.12 4.88 6.62 -2.91 -0.02 4.86 15 Total: -1.00 -66.28 270.25 1.20 -65.08 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -1.08 Total: 27.20 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 2.66 Total: -30.89 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -2.33 Total: -105.31 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.24 kcal Total: -66.28 1.20 -65.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.736 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds