Wall clock time and date at job start Mon Mar 30 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47256 * 269.99905 * 3 2 1 5 5 H 1.48506 * 109.46930 * 29.99746 * 3 2 1 6 6 H 1.48499 * 109.47104 * 149.99608 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.34223 * 126.49901 * 265.02342 * 12 9 7 14 14 N 1.36865 * 109.92564 * 179.97438 * 13 12 9 15 15 H 0.97003 * 125.06374 * 180.02562 * 14 13 12 16 16 C 1.37685 * 109.86912 * 0.02562 * 14 13 12 17 17 C 1.39128 * 133.48853 * 179.97438 * 16 14 13 18 18 C 1.37860 * 119.76612 * 179.24521 * 17 16 14 19 19 Cl 1.73595 * 119.68286 * 180.23119 * 18 17 16 20 20 C 1.38936 * 120.63279 * 0.62294 * 18 17 16 21 21 C 1.36613 * 120.52225 * 359.62891 * 20 18 17 22 22 C 1.39631 * 119.77749 * 359.97377 * 21 20 18 23 23 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 24 24 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 25 25 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 26 26 H 1.08003 * 125.03875 * 359.97438 * 13 12 9 27 27 H 1.07999 * 120.11538 * 0.02562 * 17 16 14 28 28 H 1.08003 * 119.73820 * 179.60248 * 20 18 17 29 29 H 1.07991 * 120.11439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.6780 -4.3123 -1.0744 14 7 3.5566 -5.2870 -0.6855 15 1 4.0115 -5.8987 -1.2853 16 6 3.6985 -5.2698 0.6839 17 6 4.4483 -6.0270 1.5784 18 6 4.3874 -5.7509 2.9277 19 17 5.3284 -6.6932 4.0413 20 6 3.5739 -4.7310 3.4056 21 6 2.8258 -3.9791 2.5446 22 6 2.8790 -4.2366 1.1733 23 1 -0.4850 0.8400 -0.0004 24 1 0.9652 -2.5259 -2.0381 25 1 -0.1571 -3.4138 -1.1907 26 1 2.3879 -4.1103 -2.0949 27 1 5.0854 -6.8201 1.2158 28 1 3.5323 -4.5313 4.4662 29 1 2.1954 -3.1882 2.9233 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049210.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:10 Heat of formation + Delta-G solvation = 30.949710 kcal Electronic energy + Delta-G solvation = -15452.155689 eV Core-core repulsion = 12786.404825 eV Total energy + Delta-G solvation = -2665.750864 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.15787 -38.42544 -36.95116 -36.38078 -33.66314 -32.17250 -30.41337 -29.11605 -27.90114 -24.18788 -23.92082 -22.67288 -20.12686 -18.87149 -18.38816 -17.34527 -16.77880 -16.48498 -15.90120 -15.42122 -15.31062 -14.80980 -14.53158 -14.24004 -13.94515 -13.70709 -13.24208 -12.79495 -12.65319 -12.46131 -12.23431 -11.88235 -11.87727 -11.71119 -11.30955 -10.52256 -10.32498 -9.11869 -8.88938 -8.46431 -7.89824 -6.11801 0.05798 0.56119 1.11443 1.44140 1.45823 1.54797 1.84455 2.34314 2.51871 2.85944 3.30927 3.80891 4.01289 4.17601 4.31088 4.38305 4.54655 4.65465 4.74998 4.99738 5.03555 5.26257 5.49945 5.54576 5.72318 5.83106 5.88186 6.15070 6.30554 6.72596 6.82358 7.20397 7.36897 7.60281 9.10983 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.006004 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.112239 B = 4662.192132 C = 5202.214237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.036 3.964 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.039 0.961 9 C 0.293 3.707 10 H 0.003 0.997 11 N -0.819 5.819 12 C -0.186 4.186 13 C 0.041 3.959 14 N -0.578 5.578 15 H 0.431 0.569 16 C 0.094 3.906 17 C -0.120 4.120 18 C -0.022 4.022 19 Cl -0.063 7.063 20 C -0.146 4.146 21 C -0.066 4.066 22 C -0.125 4.125 23 H 0.254 0.746 24 H 0.324 0.676 25 H 0.312 0.688 26 H 0.187 0.813 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 -13.438 1.423 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.167 4.167 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.057 0.943 9 C 0.182 3.818 10 H 0.021 0.979 11 N -0.346 5.346 12 C -0.194 4.194 13 C -0.085 4.085 14 N -0.183 5.183 15 H 0.271 0.729 16 C -0.015 4.015 17 C -0.141 4.141 18 C -0.050 4.050 19 Cl -0.034 7.034 20 C -0.165 4.165 21 C -0.084 4.084 22 C -0.131 4.131 23 H 0.063 0.937 24 H 0.137 0.863 25 H 0.123 0.877 26 H 0.204 0.796 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.451 -12.793 1.653 15.421 hybrid contribution 0.964 0.002 -0.315 1.014 sum 9.415 -12.792 1.338 15.939 Atomic orbital electron populations 1.70219 1.06851 1.26136 1.48475 1.25617 0.95344 1.01433 0.94306 0.85849 0.78725 0.80579 0.78054 1.20218 1.21074 1.20055 1.21102 0.91743 0.91209 1.53085 0.94264 1.17107 0.86808 0.88375 0.89481 0.97943 1.58940 1.28400 1.43228 1.04070 1.22079 1.04581 1.01103 0.91660 1.21677 0.95239 0.92065 0.99471 1.41500 1.40423 1.32021 1.04405 0.72900 1.18127 1.00136 0.98387 0.84818 1.19885 1.02256 1.01967 0.89998 1.20401 0.98121 0.96318 0.90126 1.98337 1.71487 1.71669 1.61888 1.20584 0.98643 0.96546 1.00774 1.20367 0.98196 0.98396 0.91479 1.19577 1.00922 0.98384 0.94237 0.93698 0.86325 0.87655 0.79595 0.82860 0.83660 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.61 12.77 21.45 0.27 -51.34 15 2 C 0.04 2.02 5.39 84.65 0.46 2.48 15 3 Si 0.94 44.14 29.54 68.60 2.03 46.17 15 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 15 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 7 C -0.53 -29.39 8.71 25.60 0.22 -29.17 15 8 H 0.04 2.21 7.74 -2.91 -0.02 2.19 15 9 C 0.29 14.54 3.13 43.42 0.14 14.67 15 10 H 0.00 0.15 8.14 -2.39 -0.02 0.13 15 11 N -0.82 -37.08 8.30 -174.95 -1.45 -38.53 15 12 C -0.19 -7.65 5.36 -18.62 -0.10 -7.75 15 13 C 0.04 1.31 11.10 82.99 0.92 2.23 15 14 N -0.58 -15.41 6.07 -187.60 -1.14 -16.55 15 15 H 0.43 7.65 8.96 -92.71 -0.83 6.82 15 16 C 0.09 2.98 7.28 39.03 0.28 3.26 15 17 C -0.12 -3.21 9.84 22.39 0.22 -2.99 15 18 C -0.02 -0.60 6.31 22.35 0.14 -0.46 15 19 Cl -0.06 -1.43 28.93 -2.72 -0.08 -1.51 15 20 C -0.15 -4.42 9.75 22.06 0.21 -4.21 15 21 C -0.07 -2.43 10.05 22.23 0.22 -2.20 15 22 C -0.13 -4.87 6.35 -20.19 -0.13 -5.00 15 23 H 0.25 14.26 8.31 -92.71 -0.77 13.49 15 24 H 0.32 13.43 7.96 -89.70 -0.71 12.72 15 25 H 0.31 12.52 9.06 -89.69 -0.81 11.71 15 26 H 0.19 4.97 7.31 -2.91 -0.02 4.95 15 27 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 28 H 0.15 3.74 8.06 -2.91 -0.02 3.72 15 29 H 0.12 4.61 8.06 -2.92 -0.02 4.59 15 Total: -1.00 -65.02 271.87 1.08 -63.94 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -1.14 Total: 26.97 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 2.59 Total: -29.14 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -2.32 Total: -106.42 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -65.02 1.08 -63.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049210.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.888 kcal (2) G-P(sol) polarization free energy of solvation -65.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds