Wall clock time and date at job start Mon Mar 30 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47271 * 2 1 4 4 C 1.50703 * 109.47436 * 239.99871 * 2 1 3 5 5 H 1.08001 * 120.00146 * 240.00039 * 4 2 1 6 6 C 1.37878 * 119.99603 * 59.99685 * 4 2 1 7 7 N 1.31515 * 120.00205 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46903 * 60.00012 * 8 6 4 10 10 H 1.48494 * 109.47099 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47113 * 300.00323 * 8 6 4 12 12 C 1.50703 * 109.47480 * 119.99842 * 2 1 3 13 13 C 1.33999 * 126.90514 * 59.94002 * 12 2 1 14 14 O 1.34439 * 110.15320 * 180.02562 * 13 12 2 15 15 C 1.34853 * 110.89141 * 0.02562 * 14 13 12 16 16 C 1.38931 * 133.39921 * 180.32763 * 15 14 13 17 17 C 1.37804 * 119.97748 * 180.16310 * 16 15 14 18 18 C 1.38862 * 120.67924 * 359.48313 * 17 16 15 19 19 Cl 1.73598 * 119.87948 * 180.25675 * 18 17 16 20 20 C 1.37822 * 120.24554 * 0.23694 * 18 17 16 21 21 C 1.39423 * 119.59263 * 0.02562 * 20 18 17 22 22 H 1.09004 * 109.46784 * 300.00173 * 1 2 3 23 23 H 1.09004 * 109.47124 * 59.99902 * 1 2 3 24 24 H 1.08994 * 109.47113 * 180.02562 * 1 2 3 25 25 H 0.96994 * 119.99829 * 180.02562 * 7 6 4 26 26 H 1.08002 * 124.92055 * 0.05562 * 13 12 2 27 27 H 1.07997 * 120.00872 * 359.92385 * 16 15 14 28 28 H 1.08002 * 119.66367 * 179.76924 * 17 16 15 29 29 H 1.08008 * 120.20315 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 6 2.0324 -0.7104 1.2305 13 6 1.7946 -1.9823 1.5788 14 8 2.4064 -2.2661 2.7418 15 6 3.0732 -1.1913 3.2092 16 6 3.8511 -0.9673 4.3384 17 6 4.4142 0.2722 4.5518 18 6 4.2222 1.3037 3.6423 19 17 4.9468 2.8551 3.9284 20 6 3.4587 1.1004 2.5130 21 6 2.8794 -0.1478 2.2891 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7088 1.1613 -3.4843 26 1 1.1984 -2.6786 1.0077 27 1 4.0111 -1.7632 5.0506 28 1 5.0149 0.4417 5.4332 29 1 3.3094 1.9034 1.8062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:36 Heat of formation + Delta-G solvation = 8.299716 kcal Electronic energy + Delta-G solvation = -15482.125584 eV Core-core repulsion = 12783.099791 eV Total energy + Delta-G solvation = -2699.025793 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.95779 -37.82371 -36.03168 -35.01938 -32.23902 -30.39911 -29.61184 -28.06339 -25.19129 -23.14290 -22.20864 -21.94873 -19.09441 -17.11177 -16.71772 -16.01166 -15.74405 -15.52662 -14.60652 -13.98777 -13.79479 -12.99194 -12.98101 -12.83029 -12.39980 -11.99564 -11.56251 -11.15684 -11.03850 -10.97623 -10.94854 -10.71413 -10.43645 -10.14766 -9.72049 -9.53569 -8.96981 -8.43541 -8.19710 -7.55907 -6.07382 -4.15043 1.17489 1.42564 2.28032 3.01316 3.26264 3.27962 3.32879 3.35978 3.87642 4.37995 4.83601 4.94987 5.23448 5.26172 5.42401 5.56705 5.80202 5.98184 6.22576 6.29384 6.40128 6.60320 6.74396 6.78447 6.84640 7.11238 7.23105 7.52959 7.68681 7.87163 8.02009 8.30643 8.86891 9.50303 10.98220 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.006396 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.215389 B = 4376.458980 C = 4953.853776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.101 3.899 3 H 0.037 0.963 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.113 4.113 13 C -0.021 4.021 14 O -0.200 6.200 15 C 0.049 3.951 16 C -0.101 4.101 17 C -0.096 4.096 18 C -0.062 4.062 19 Cl -0.078 7.078 20 C -0.049 4.049 21 C -0.113 4.113 22 H 0.010 0.990 23 H 0.087 0.913 24 H 0.027 0.973 25 H 0.262 0.738 26 H 0.207 0.793 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -1.014 11.804 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.082 3.918 3 H 0.055 0.945 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.114 4.114 13 C -0.084 4.084 14 O -0.102 6.102 15 C 0.001 3.999 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.088 4.088 19 Cl -0.049 7.049 20 C -0.067 4.067 21 C -0.114 4.114 22 H 0.029 0.971 23 H 0.106 0.894 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.224 0.776 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.142 -1.005 11.812 12.557 hybrid contribution 0.381 -0.215 -1.028 1.117 sum 4.523 -1.220 10.784 11.757 Atomic orbital electron populations 1.21804 0.97402 0.99286 1.00496 1.17339 0.92514 0.95269 0.86655 0.94524 1.21079 1.31553 1.12594 0.89836 0.92522 1.24948 0.94931 0.94957 0.98958 1.69865 1.36388 1.22713 1.23697 0.86622 0.79295 0.79741 0.82173 1.20200 1.21222 1.20230 1.22024 0.98170 0.94010 0.97239 1.23735 1.01008 0.97932 0.85729 1.83969 1.55438 1.35470 1.35341 1.19700 0.97489 0.86225 0.96475 1.19678 0.99119 0.97503 0.95695 1.20597 1.00785 0.90920 0.99190 1.20522 1.02695 0.87558 0.98061 1.98340 1.82346 1.28165 1.96072 1.20448 0.94359 0.96489 0.95443 1.20004 1.01151 0.93964 0.96298 0.97137 0.89395 0.95345 0.92759 0.77633 0.84762 0.84437 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.85 37.16 0.33 -2.74 15 2 C 0.10 2.45 2.71 -92.92 -0.25 2.20 15 3 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 4 C -0.51 -13.54 8.42 -34.44 -0.29 -13.83 15 5 H 0.06 1.49 7.72 -52.49 -0.41 1.08 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.54 11.32 55.43 0.63 -23.91 15 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 15 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 12 C -0.11 -2.42 5.02 -102.66 -0.52 -2.94 15 13 C -0.02 -0.40 11.43 29.24 0.33 -0.07 15 14 O -0.20 -3.64 10.58 3.81 0.04 -3.60 15 15 C 0.05 0.87 7.41 -38.49 -0.29 0.59 15 16 C -0.10 -1.43 10.06 -39.48 -0.40 -1.83 15 17 C -0.10 -1.28 9.79 -39.51 -0.39 -1.67 15 18 C -0.06 -0.94 6.32 -39.50 -0.25 -1.19 15 19 Cl -0.08 -1.06 28.95 -51.86 -1.50 -2.56 15 20 C -0.05 -0.87 9.87 -39.29 -0.39 -1.25 15 21 C -0.11 -2.21 6.38 -105.16 -0.67 -2.88 15 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 23 H 0.09 2.24 6.07 -51.93 -0.32 1.93 15 24 H 0.03 0.61 8.03 -51.93 -0.42 0.19 15 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 26 H 0.21 3.45 8.06 -52.49 -0.42 3.02 15 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.14 1.41 8.06 -52.49 -0.42 0.98 15 29 H 0.14 2.47 8.06 -52.48 -0.42 2.04 15 LS Contribution 271.92 15.07 4.10 4.10 Total: -1.00 -27.71 271.92 -7.43 -35.14 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -2.81 Total: -0.90 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -2.87 Total: -24.00 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.63 Total: -23.91 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.71 -7.43 -35.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.441 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds