Wall clock time and date at job start Mon Mar 30 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47271 * 2 1 4 4 C 1.50703 * 109.47436 * 239.99871 * 2 1 3 5 5 H 1.08001 * 120.00146 * 240.00039 * 4 2 1 6 6 C 1.37878 * 119.99603 * 59.99685 * 4 2 1 7 7 N 1.31515 * 120.00205 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46903 * 60.00012 * 8 6 4 10 10 H 1.48494 * 109.47099 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47113 * 300.00323 * 8 6 4 12 12 C 1.50703 * 109.47480 * 119.99842 * 2 1 3 13 13 C 1.33999 * 126.90514 * 59.94002 * 12 2 1 14 14 O 1.34439 * 110.15320 * 180.02562 * 13 12 2 15 15 C 1.34853 * 110.89141 * 0.02562 * 14 13 12 16 16 C 1.38931 * 133.39921 * 180.32763 * 15 14 13 17 17 C 1.37804 * 119.97748 * 180.16310 * 16 15 14 18 18 C 1.38862 * 120.67924 * 359.48313 * 17 16 15 19 19 Cl 1.73598 * 119.87948 * 180.25675 * 18 17 16 20 20 C 1.37822 * 120.24554 * 0.23694 * 18 17 16 21 21 C 1.39423 * 119.59263 * 0.02562 * 20 18 17 22 22 H 1.09004 * 109.46784 * 300.00173 * 1 2 3 23 23 H 1.09004 * 109.47124 * 59.99902 * 1 2 3 24 24 H 1.08994 * 109.47113 * 180.02562 * 1 2 3 25 25 H 0.96994 * 119.99829 * 180.02562 * 7 6 4 26 26 H 1.08002 * 124.92055 * 0.05562 * 13 12 2 27 27 H 1.07997 * 120.00872 * 359.92385 * 16 15 14 28 28 H 1.08002 * 119.66367 * 179.76924 * 17 16 15 29 29 H 1.08008 * 120.20315 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 6 2.0324 -0.7104 1.2305 13 6 1.7946 -1.9823 1.5788 14 8 2.4064 -2.2661 2.7418 15 6 3.0732 -1.1913 3.2092 16 6 3.8511 -0.9673 4.3384 17 6 4.4142 0.2722 4.5518 18 6 4.2222 1.3037 3.6423 19 17 4.9468 2.8551 3.9284 20 6 3.4587 1.1004 2.5130 21 6 2.8794 -0.1478 2.2891 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7088 1.1613 -3.4843 26 1 1.1984 -2.6786 1.0077 27 1 4.0111 -1.7632 5.0506 28 1 5.0149 0.4417 5.4332 29 1 3.3094 1.9034 1.8062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:35 Heat of formation + Delta-G solvation = -5.309310 kcal Electronic energy + Delta-G solvation = -15482.715715 eV Core-core repulsion = 12783.099791 eV Total energy + Delta-G solvation = -2699.615925 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.34615 -39.06081 -37.21212 -36.83235 -33.99442 -31.90917 -30.96217 -29.59628 -27.22143 -24.49680 -23.88494 -23.26038 -20.65218 -18.62498 -18.25438 -17.67933 -17.03581 -16.97651 -16.46311 -15.31617 -15.05472 -14.72941 -14.58450 -14.19063 -13.67175 -13.60298 -13.33040 -12.91078 -12.82016 -12.49460 -12.29026 -12.19989 -12.10106 -11.85477 -11.49358 -11.20778 -10.68631 -10.48052 -9.46825 -9.01260 -8.10816 -6.25768 -0.09798 0.15394 1.08837 1.42021 1.43869 1.50241 1.57060 1.91545 2.42789 2.58178 3.16678 3.55963 3.68253 3.99376 4.23887 4.32993 4.45125 4.61779 4.74737 4.88040 5.04077 5.09100 5.15344 5.23835 5.26472 5.48269 5.54402 5.58398 5.84833 6.04847 6.21900 6.33978 6.82043 7.42769 8.93464 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.006396 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.215389 B = 4376.458980 C = 4953.853776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.104 3.896 3 H -0.001 1.001 4 C -0.525 4.525 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.276 1.276 12 C -0.154 4.154 13 C -0.005 4.005 14 O -0.196 6.196 15 C 0.035 3.965 16 C -0.087 4.087 17 C -0.083 4.083 18 C -0.056 4.056 19 Cl -0.062 7.062 20 C -0.077 4.077 21 C -0.141 4.141 22 H 0.021 0.979 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.263 0.737 26 H 0.225 0.775 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -2.291 13.627 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.086 3.914 3 H 0.018 0.982 4 C -0.563 4.563 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.202 1.202 12 C -0.155 4.155 13 C -0.069 4.069 14 O -0.098 6.098 15 C -0.013 4.013 16 C -0.105 4.105 17 C -0.101 4.101 18 C -0.082 4.082 19 Cl -0.033 7.033 20 C -0.096 4.096 21 C -0.142 4.142 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.241 0.759 27 H 0.193 0.807 28 H 0.198 0.802 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.373 -2.283 13.650 14.846 hybrid contribution 0.071 0.269 -1.479 1.505 sum 5.445 -2.015 12.171 13.484 Atomic orbital electron populations 1.21643 0.96916 0.99695 0.99683 1.17092 0.92954 0.93437 0.87922 0.98245 1.21369 1.31397 1.12576 0.90976 0.92819 1.25704 0.95134 0.95633 1.01752 1.70001 1.37379 1.23924 1.24189 0.85659 0.78552 0.79047 0.78708 1.19106 1.20958 1.20192 1.21794 1.00853 0.95409 0.97484 1.23947 0.99981 0.97204 0.85728 1.83966 1.55457 1.35585 1.34805 1.20153 0.98427 0.85325 0.97384 1.20217 0.96843 0.98760 0.94653 1.21101 0.99795 0.89675 0.99508 1.20705 1.01413 0.88818 0.97299 1.98349 1.81836 1.27296 1.95848 1.20422 0.96429 0.95908 0.96827 1.20115 1.02025 0.95354 0.96727 0.96000 0.91983 0.94177 0.92826 0.75855 0.80686 0.80237 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.85 71.98 0.64 -5.20 15 2 C 0.10 5.31 2.71 -12.29 -0.03 5.28 15 3 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 15 4 C -0.53 -28.45 8.42 25.60 0.22 -28.24 15 5 H 0.05 2.87 7.72 -2.91 -0.02 2.84 15 6 C 0.02 0.91 5.30 84.65 0.45 1.36 15 7 N -0.92 -52.12 11.32 21.45 0.24 -51.88 15 8 Si 0.95 42.91 29.54 68.60 2.03 44.94 15 9 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 12 C -0.15 -6.75 5.02 -18.59 -0.09 -6.84 15 13 C -0.01 -0.20 11.43 66.85 0.76 0.57 15 14 O -0.20 -6.84 10.58 -9.28 -0.10 -6.94 15 15 C 0.03 1.17 7.41 22.98 0.17 1.34 15 16 C -0.09 -2.11 10.06 22.33 0.22 -1.89 15 17 C -0.08 -1.88 9.79 22.32 0.22 -1.66 15 18 C -0.06 -1.60 6.32 22.32 0.14 -1.46 15 19 Cl -0.06 -1.57 28.95 -2.72 -0.08 -1.65 15 20 C -0.08 -2.79 9.87 22.46 0.22 -2.57 15 21 C -0.14 -5.58 6.38 -20.21 -0.13 -5.71 15 22 H 0.02 0.94 8.14 -2.38 -0.02 0.92 15 23 H 0.06 3.29 6.07 -2.38 -0.01 3.27 15 24 H 0.04 1.76 8.03 -2.39 -0.02 1.74 15 25 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15 26 H 0.23 7.29 8.06 -2.91 -0.02 7.27 15 27 H 0.18 2.86 8.06 -2.91 -0.02 2.84 15 28 H 0.18 2.62 8.06 -2.91 -0.02 2.60 15 29 H 0.12 4.64 8.06 -2.91 -0.02 4.61 15 Total: -1.00 -61.25 271.92 6.04 -55.21 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.16 Total: 5.31 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 2.79 Total: -45.00 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.24 Total: -51.88 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.10 Total: -6.94 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -61.25 6.04 -55.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.901 kcal (2) G-P(sol) polarization free energy of solvation -61.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds