Wall clock time and date at job start Mon Mar 30 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47760 * 2 1 4 4 C 1.50707 * 109.47296 * 120.00365 * 2 1 3 5 5 H 1.07997 * 119.99870 * 119.99968 * 4 2 1 6 6 C 1.37873 * 119.99723 * 299.99874 * 4 2 1 7 7 N 1.31519 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00002 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47153 * 59.99580 * 8 6 4 10 10 H 1.48501 * 109.47177 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46898 * 299.99631 * 8 6 4 12 12 C 1.50698 * 109.47165 * 240.00125 * 2 1 3 13 13 C 1.34003 * 124.93095 * 120.00166 * 12 2 1 14 14 C 1.46783 * 106.19197 * 179.97438 * 13 12 2 15 15 C 1.39438 * 134.36027 * 179.97438 * 14 13 12 16 16 C 1.36718 * 119.73962 * 179.97438 * 15 14 13 17 17 C 1.38739 * 120.43181 * 0.04308 * 16 15 14 18 18 C 1.37955 * 120.66715 * 359.97438 * 17 16 15 19 19 Cl 1.73602 * 120.10070 * 179.97438 * 18 17 16 20 20 C 1.39040 * 119.79519 * 0.02562 * 18 17 16 21 21 O 1.34447 * 124.92907 * 299.94861 * 12 2 1 22 22 H 1.09001 * 109.46902 * 300.00109 * 1 2 3 23 23 H 1.09000 * 109.47034 * 59.99948 * 1 2 3 24 24 H 1.09001 * 109.47044 * 179.97438 * 1 2 3 25 25 H 0.97002 * 119.99605 * 179.97438 * 7 6 4 26 26 H 1.08001 * 126.89836 * 359.94943 * 13 12 2 27 27 H 1.07997 * 120.12631 * 0.02562 * 15 14 13 28 28 H 1.08007 * 119.78503 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.66827 * 180.25362 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8280 -2.5200 4.0081 12 6 2.0323 -0.7104 -1.2305 13 6 2.8060 -0.1565 -2.1741 14 6 3.0476 -1.2049 -3.1726 15 6 3.7594 -1.2653 -4.3701 16 6 3.7867 -2.4305 -5.0848 17 6 3.1103 -3.5519 -4.6267 18 6 2.4004 -3.5113 -3.4446 19 17 1.5589 -4.9231 -2.8855 20 6 2.3601 -2.3360 -2.7028 21 8 1.7701 -1.9921 -1.5403 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7090 1.1613 3.4844 26 1 3.1769 0.8576 -2.1956 27 1 4.2877 -0.3953 -4.7311 28 1 4.3381 -2.4782 -6.0123 29 1 3.1435 -4.4671 -5.1991 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261051852.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:04 Heat of formation + Delta-G solvation = 8.527072 kcal Electronic energy + Delta-G solvation = -15488.932410 eV Core-core repulsion = 12789.916476 eV Total energy + Delta-G solvation = -2699.015934 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.97054 -37.86308 -36.23691 -34.55659 -32.21802 -30.93743 -29.99123 -28.01850 -25.28449 -23.07549 -22.46441 -21.06776 -20.03193 -17.13809 -16.86039 -16.05405 -15.49057 -15.39175 -14.65021 -14.28556 -13.53044 -12.95519 -12.88472 -12.75231 -12.42294 -11.98233 -11.54204 -11.38179 -11.12510 -11.04101 -10.92914 -10.77960 -10.46001 -10.31065 -9.87614 -9.55007 -9.16655 -8.52295 -8.30174 -7.60380 -6.15176 -4.23464 1.06614 1.51797 2.25495 2.95686 3.22366 3.27881 3.31563 3.36417 3.82743 4.34480 4.85372 4.93613 5.14298 5.16609 5.32444 5.45592 5.82098 5.91276 6.08894 6.24688 6.41185 6.56124 6.63266 6.73672 6.85023 6.92840 7.05039 7.38320 7.62984 7.83533 7.90096 8.15784 8.76909 9.42191 10.90378 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.006441 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.458867 B = 4345.847920 C = 4824.546987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.103 3.897 3 H 0.066 0.934 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.121 3.879 13 C -0.264 4.264 14 C -0.101 4.101 15 C -0.078 4.078 16 C -0.131 4.131 17 C -0.107 4.107 18 C -0.017 4.017 19 Cl -0.068 7.068 20 C 0.041 3.959 21 O -0.172 6.172 22 H 0.094 0.906 23 H 0.014 0.986 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.155 0.845 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -4.921 -12.592 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.085 3.915 3 H 0.083 0.917 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.072 3.928 13 C -0.283 4.283 14 C -0.102 4.102 15 C -0.096 4.096 16 C -0.150 4.150 17 C -0.125 4.125 18 C -0.044 4.044 19 Cl -0.039 7.039 20 C -0.008 4.008 21 O -0.072 6.072 22 H 0.113 0.887 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.173 0.827 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.059 -5.113 -12.230 13.604 hybrid contribution 0.365 -0.500 0.800 1.012 sum 3.424 -5.613 -11.430 13.186 Atomic orbital electron populations 1.21818 0.96485 1.00260 1.01026 1.17908 0.93827 0.94531 0.85241 0.91665 1.20929 1.32244 1.12912 0.89484 0.92171 1.24910 0.94704 0.94901 0.99045 1.69851 1.36116 1.22607 1.24064 0.86517 0.79306 0.79846 0.81625 1.20057 1.21075 1.20020 1.23915 0.92883 0.79515 0.96454 1.22133 1.09577 1.00412 0.96136 1.20002 0.99941 0.93547 0.96727 1.20312 0.98099 0.98329 0.92904 1.20582 1.01327 0.92365 1.00691 1.20681 0.97981 0.99846 0.94023 1.19698 1.02704 0.85872 0.96168 1.98362 1.76788 1.39319 1.89430 1.19281 0.98644 0.94517 0.88331 1.84156 1.60907 1.29050 1.33049 0.88735 0.96680 0.94592 0.92507 0.82740 0.85404 0.85059 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.95 37.16 0.33 -2.95 15 2 C 0.10 2.53 2.69 -92.92 -0.25 2.28 15 3 H 0.07 1.64 8.08 -51.93 -0.42 1.22 15 4 C -0.52 -14.03 8.55 -34.44 -0.29 -14.32 15 5 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 15 7 N -0.89 -24.29 11.32 55.43 0.63 -23.67 15 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 12 C 0.12 2.71 5.68 -35.80 -0.20 2.51 15 13 C -0.26 -5.17 10.97 -37.62 -0.41 -5.58 15 14 C -0.10 -1.83 6.40 -105.16 -0.67 -2.50 15 15 C -0.08 -1.11 10.05 -39.68 -0.40 -1.51 15 16 C -0.13 -1.60 9.98 -39.95 -0.40 -2.00 15 17 C -0.11 -1.41 9.80 -39.50 -0.39 -1.80 15 18 C -0.02 -0.29 6.33 -39.39 -0.25 -0.54 15 19 Cl -0.07 -1.07 28.97 -51.86 -1.50 -2.57 15 20 C 0.04 0.81 7.21 -38.45 -0.28 0.53 15 21 O -0.17 -3.88 10.58 3.87 0.04 -3.84 15 22 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 26 H 0.15 2.66 8.06 -52.49 -0.42 2.24 15 27 H 0.13 1.47 8.06 -52.49 -0.42 1.04 15 28 H 0.13 1.14 8.06 -52.48 -0.42 0.71 15 29 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 LS Contribution 272.34 15.07 4.10 4.10 Total: -1.00 -28.01 272.34 -7.87 -35.88 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -2.81 Total: -1.70 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -3.31 Total: -24.18 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.63 Total: -23.67 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.01 -7.87 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051852.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.407 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds