Wall clock time and date at job start Mon Mar 30 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47760 * 2 1 4 4 C 1.50707 * 109.47296 * 120.00365 * 2 1 3 5 5 H 1.07997 * 119.99870 * 119.99968 * 4 2 1 6 6 C 1.37873 * 119.99723 * 299.99874 * 4 2 1 7 7 N 1.31519 * 119.99835 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00002 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47153 * 59.99580 * 8 6 4 10 10 H 1.48501 * 109.47177 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46898 * 299.99631 * 8 6 4 12 12 C 1.50698 * 109.47165 * 240.00125 * 2 1 3 13 13 C 1.34003 * 124.93095 * 120.00166 * 12 2 1 14 14 C 1.46783 * 106.19197 * 179.97438 * 13 12 2 15 15 C 1.39438 * 134.36027 * 179.97438 * 14 13 12 16 16 C 1.36718 * 119.73962 * 179.97438 * 15 14 13 17 17 C 1.38739 * 120.43181 * 0.04308 * 16 15 14 18 18 C 1.37955 * 120.66715 * 359.97438 * 17 16 15 19 19 Cl 1.73602 * 120.10070 * 179.97438 * 18 17 16 20 20 C 1.39040 * 119.79519 * 0.02562 * 18 17 16 21 21 O 1.34447 * 124.92907 * 299.94861 * 12 2 1 22 22 H 1.09001 * 109.46902 * 300.00109 * 1 2 3 23 23 H 1.09000 * 109.47034 * 59.99948 * 1 2 3 24 24 H 1.09001 * 109.47044 * 179.97438 * 1 2 3 25 25 H 0.97002 * 119.99605 * 179.97438 * 7 6 4 26 26 H 1.08001 * 126.89836 * 359.94943 * 13 12 2 27 27 H 1.07997 * 120.12631 * 0.02562 * 15 14 13 28 28 H 1.08007 * 119.78503 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.66827 * 180.25362 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8280 -2.5200 4.0081 12 6 2.0323 -0.7104 -1.2305 13 6 2.8060 -0.1565 -2.1741 14 6 3.0476 -1.2049 -3.1726 15 6 3.7594 -1.2653 -4.3701 16 6 3.7867 -2.4305 -5.0848 17 6 3.1103 -3.5519 -4.6267 18 6 2.4004 -3.5113 -3.4446 19 17 1.5589 -4.9231 -2.8855 20 6 2.3601 -2.3360 -2.7028 21 8 1.7701 -1.9921 -1.5403 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7090 1.1613 3.4844 26 1 3.1769 0.8576 -2.1956 27 1 4.2877 -0.3953 -4.7311 28 1 4.3381 -2.4782 -6.0123 29 1 3.1435 -4.4671 -5.1991 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051852.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:04 Heat of formation + Delta-G solvation = -5.603301 kcal Electronic energy + Delta-G solvation = -15489.545149 eV Core-core repulsion = 12789.916476 eV Total energy + Delta-G solvation = -2699.628673 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.40729 -39.08714 -37.44437 -36.45911 -33.80099 -32.65354 -31.19414 -29.49387 -27.33209 -24.56890 -23.79477 -22.47995 -21.64386 -18.66627 -18.47461 -17.52266 -17.07916 -16.93244 -16.18377 -15.53865 -15.05780 -14.79770 -14.34717 -14.07008 -13.94219 -13.45206 -13.09800 -12.96058 -12.84915 -12.56551 -12.40481 -12.29914 -12.20614 -11.97726 -11.73210 -11.27217 -10.76448 -10.57598 -9.57210 -9.00551 -8.19613 -6.35085 -0.15324 0.30661 1.04956 1.38506 1.40667 1.44707 1.51536 1.82369 2.39094 2.64397 3.08413 3.54252 3.72492 4.02412 4.25655 4.28567 4.47553 4.60266 4.70042 4.78402 4.93407 4.99986 5.10594 5.23871 5.35134 5.40522 5.50090 5.61112 5.77934 5.88400 6.10163 6.33412 6.67764 7.32983 8.84500 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.006441 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.458867 B = 4345.847920 C = 4824.546987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.075 3.925 13 C -0.247 4.247 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.114 4.114 17 C -0.085 4.085 18 C -0.043 4.043 19 Cl -0.072 7.072 20 C 0.009 3.991 21 O -0.203 6.203 22 H 0.075 0.925 23 H 0.034 0.966 24 H 0.023 0.977 25 H 0.268 0.732 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.183 0.817 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 -5.597 -15.010 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.027 3.973 13 C -0.266 4.266 14 C -0.125 4.125 15 C -0.090 4.090 16 C -0.132 4.132 17 C -0.104 4.104 18 C -0.070 4.070 19 Cl -0.043 7.043 20 C -0.039 4.039 21 O -0.104 6.104 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.190 0.810 27 H 0.178 0.822 28 H 0.200 0.800 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.709 -5.784 -14.658 16.447 hybrid contribution -0.075 -0.361 1.339 1.388 sum 4.633 -6.145 -13.320 15.383 Atomic orbital electron populations 1.21644 0.96483 0.99328 1.00918 1.17650 0.93912 0.93964 0.85956 0.92982 1.21130 1.32465 1.12732 0.91184 0.93877 1.25607 0.94841 0.95573 1.01487 1.69941 1.36594 1.23398 1.24734 0.85634 0.78924 0.78632 0.78668 1.19566 1.19937 1.20209 1.23446 0.96153 0.80425 0.97256 1.22432 1.07289 1.01321 0.95531 1.20222 1.01622 0.92394 0.98287 1.20797 0.96709 1.00429 0.91087 1.21193 0.99762 0.90666 1.01592 1.21282 0.95216 1.01694 0.92180 1.20089 1.04313 0.85224 0.97371 1.98353 1.77076 1.39109 1.89742 1.19854 0.99655 0.96376 0.87992 1.84038 1.62286 1.29116 1.34979 0.90677 0.94695 0.95789 0.92268 0.81001 0.82178 0.79982 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.95 71.98 0.64 -5.62 15 2 C 0.10 5.33 2.69 -12.28 -0.03 5.30 15 3 H 0.05 2.75 8.08 -2.39 -0.02 2.73 15 4 C -0.54 -30.36 8.55 25.60 0.22 -30.14 15 5 H 0.04 2.51 7.74 -2.91 -0.02 2.49 15 6 C 0.03 1.38 5.30 84.65 0.45 1.83 15 7 N -0.91 -50.88 11.32 21.45 0.24 -50.64 15 8 Si 0.96 43.80 29.54 68.60 2.03 45.83 15 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 12 C 0.07 3.50 5.68 24.72 0.14 3.64 15 13 C -0.25 -9.73 10.97 23.54 0.26 -9.47 15 14 C -0.12 -4.34 6.40 -20.22 -0.13 -4.47 15 15 C -0.07 -1.75 10.05 22.20 0.22 -1.53 15 16 C -0.11 -2.15 9.98 22.03 0.22 -1.93 15 17 C -0.09 -1.90 9.80 22.32 0.22 -1.68 15 18 C -0.04 -1.36 6.33 22.40 0.14 -1.22 15 19 Cl -0.07 -2.22 28.97 -2.72 -0.08 -2.30 15 20 C 0.01 0.36 7.21 23.00 0.17 0.53 15 21 O -0.20 -9.57 10.58 -9.06 -0.10 -9.66 15 22 H 0.07 3.98 6.07 -2.39 -0.01 3.97 15 23 H 0.03 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 25 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 26 H 0.17 5.85 8.06 -2.91 -0.02 5.83 15 27 H 0.16 2.82 8.06 -2.91 -0.02 2.80 15 28 H 0.18 1.70 8.06 -2.91 -0.02 1.68 15 29 H 0.17 2.60 8.06 -2.91 -0.02 2.57 15 Total: -1.00 -63.81 272.34 5.77 -58.04 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.16 Total: 3.50 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 2.52 Total: -44.77 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.24 Total: -50.64 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.10 Total: -9.66 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -63.81 5.77 -58.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051852.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.435 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds