Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47298 * 2 1 4 4 N 1.33563 * 125.68529 * 269.69016 * 3 2 1 5 5 C 1.32538 * 109.31086 * 180.26824 * 4 3 2 6 6 C 1.41389 * 131.34360 * 180.02562 * 5 4 3 7 7 C 1.35428 * 119.95449 * 179.97438 * 6 5 4 8 8 C 1.46631 * 118.94110 * 359.97438 * 7 6 5 9 9 C 1.41283 * 120.49321 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00156 * 156.17902 * 9 8 7 11 11 C 1.39697 * 120.00024 * 336.19071 * 9 8 7 12 12 N 1.30991 * 120.00085 * 343.03388 * 11 9 8 13 13 Si 1.86811 * 120.00139 * 163.03559 * 11 9 8 14 14 H 1.48499 * 109.46757 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47025 * 119.99566 * 13 11 9 16 16 H 1.48495 * 109.46867 * 239.99833 * 13 11 9 17 17 C 1.39248 * 119.01056 * 0.03450 * 8 7 6 18 18 N 1.35915 * 120.19742 * 359.92647 * 17 8 7 19 19 C 1.35099 * 125.68462 * 90.00023 * 3 2 1 20 20 Cl 1.73597 * 126.46420 * 359.69957 * 19 3 2 21 21 H 1.09000 * 109.47008 * 60.00037 * 1 2 3 22 22 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47026 * 300.00262 * 1 2 3 24 24 H 1.09003 * 109.46874 * 239.99587 * 2 1 3 25 25 H 1.09007 * 109.46834 * 120.00642 * 2 1 3 26 26 H 1.08001 * 120.02563 * 359.94678 * 6 5 4 27 27 H 1.07992 * 120.53360 * 179.97438 * 7 6 5 28 28 H 0.97004 * 120.00392 * 180.02562 * 12 11 9 29 29 H 1.08002 * 119.89430 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2976 2.1533 -1.0848 5 6 2.7251 3.3509 -0.7112 6 6 3.1294 4.4759 -1.4663 7 6 3.5312 5.6048 -0.8354 8 6 3.5371 5.6347 0.6306 9 6 3.9506 6.7951 1.3224 10 1 3.6096 6.9724 2.3317 11 6 4.8003 7.7134 0.7008 12 7 5.4758 7.3630 -0.3655 13 14 4.9733 9.4410 1.3901 14 1 4.1101 9.5838 2.5900 15 1 6.3890 9.6843 1.7663 16 1 4.5577 10.4282 0.3615 17 6 3.1305 4.5018 1.3308 18 7 2.7337 3.3889 0.6591 19 6 2.2951 2.1637 1.0973 20 17 2.1108 1.6644 2.7497 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 3.1181 4.4347 -2.5454 27 1 3.8422 6.4694 -1.4029 28 1 6.0661 8.0004 -0.7969 29 1 3.1289 4.5083 2.4108 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065603.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = 52.158835 kcal Electronic energy + Delta-G solvation = -15486.370519 eV Core-core repulsion = 12821.539351 eV Total energy + Delta-G solvation = -2664.831168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50917 -36.55169 -35.94181 -34.15694 -32.52375 -32.13149 -29.40171 -27.24230 -25.45923 -23.32021 -21.70903 -21.40168 -19.47295 -17.97036 -16.23016 -15.79779 -15.40781 -15.00980 -14.31804 -13.88627 -13.61402 -13.35665 -13.05773 -12.33907 -12.12929 -11.72500 -11.48566 -11.44098 -11.25591 -11.09517 -10.82785 -10.62513 -10.59165 -10.26983 -10.08664 -9.72360 -9.32673 -9.14142 -7.67587 -7.22852 -6.75859 -4.73634 2.10997 2.37621 2.46861 2.84909 2.89242 2.94946 3.60111 3.65365 4.09653 4.25626 5.05068 5.07983 5.39993 5.66129 5.77193 5.83118 6.02761 6.14917 6.18012 6.35566 6.37064 6.54467 6.57316 6.76722 6.96756 7.16156 7.25359 7.58445 7.66298 7.89254 8.18284 8.33675 8.50174 8.84196 9.76834 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.006061 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.236998 B = 4618.940217 C = 5186.703199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.034 4.034 3 C 0.058 3.942 4 N -0.507 5.507 5 C 0.198 3.802 6 C -0.118 4.118 7 C -0.064 4.064 8 C 0.104 3.896 9 C -0.437 4.437 10 H 0.089 0.911 11 C 0.074 3.926 12 N -0.786 5.786 13 Si 0.920 3.080 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.268 1.268 17 C -0.171 4.171 18 N -0.291 5.291 19 C -0.063 4.063 20 Cl -0.038 7.038 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.145 0.855 28 H 0.289 0.711 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -3.598 1.387 5.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.081 4.081 4 N -0.229 5.229 5 C -0.046 4.046 6 C -0.138 4.138 7 C -0.088 4.088 8 C 0.100 3.900 9 C -0.465 4.465 10 H 0.107 0.893 11 C -0.146 4.146 12 N -0.410 5.410 13 Si 0.743 3.257 14 H -0.181 1.181 15 H -0.196 1.196 16 H -0.193 1.193 17 C -0.296 4.296 18 N 0.043 4.957 19 C -0.205 4.205 20 Cl -0.010 7.010 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.162 0.838 28 H 0.100 0.900 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.330 -3.745 0.621 5.050 hybrid contribution 0.372 1.107 1.420 1.838 sum -2.958 -2.638 2.041 4.458 Atomic orbital electron populations 1.21678 0.95174 1.00854 1.02175 1.19746 0.95491 0.89769 1.02270 1.20067 1.04638 0.96790 0.86651 1.70506 1.22481 1.01772 1.28098 1.20370 1.08558 0.95787 0.79842 1.19907 1.04627 0.90573 0.98715 1.22673 0.94260 0.97113 0.94707 1.18311 0.89922 0.90877 0.90881 1.19419 1.23761 1.01959 1.01377 0.89264 1.26010 0.93221 1.01164 0.94155 1.69827 1.17967 1.36431 1.16805 0.86043 0.79211 0.80158 0.80239 1.18059 1.19580 1.19269 1.21365 1.25390 0.86347 0.96458 1.41871 1.36942 1.08730 1.08192 1.20899 1.23918 0.89381 0.86316 1.98268 1.96876 1.89149 1.16711 0.92573 0.92828 0.92822 0.90831 0.91103 0.85256 0.83798 0.90013 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 37.16 0.37 -1.63 15 2 C -0.03 -0.55 6.30 -27.89 -0.18 -0.73 15 3 C 0.06 1.23 6.31 -82.96 -0.52 0.70 15 4 N -0.51 -11.82 11.31 -8.88 -0.10 -11.92 15 5 C 0.20 4.76 7.78 -155.88 -1.21 3.55 15 6 C -0.12 -2.65 10.06 -39.39 -0.40 -3.05 15 7 C -0.06 -1.48 8.87 -37.20 -0.33 -1.81 15 8 C 0.10 2.55 5.70 -104.98 -0.60 1.96 15 9 C -0.44 -10.35 9.06 -37.88 -0.34 -10.69 15 10 H 0.09 2.03 7.90 -52.48 -0.41 1.62 15 11 C 0.07 1.65 5.20 -17.37 -0.09 1.56 15 12 N -0.79 -17.87 10.88 55.53 0.60 -17.27 15 13 Si 0.92 16.59 29.59 -169.99 -5.03 11.56 15 14 H -0.26 -4.63 7.11 56.52 0.40 -4.23 15 15 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 16 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 17 C -0.17 -4.15 10.72 -15.37 -0.16 -4.32 15 18 N -0.29 -7.01 2.93 -58.27 -0.17 -7.18 15 19 C -0.06 -1.37 7.58 -16.21 -0.12 -1.49 15 20 Cl -0.04 -0.69 28.83 -51.86 -1.49 -2.19 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.07 1.05 7.89 -51.93 -0.41 0.64 15 26 H 0.13 2.55 8.06 -52.49 -0.42 2.13 15 27 H 0.14 3.26 6.27 -52.49 -0.33 2.93 15 28 H 0.29 5.89 8.30 -40.82 -0.34 5.55 15 29 H 0.13 3.13 8.06 -52.49 -0.42 2.70 15 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -26.14 271.37 -8.52 -34.66 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.82 Total: 4.20 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.59 Total: -15.95 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.33 Total: -36.37 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.49 Total: -2.19 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.14 -8.52 -34.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065603.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.815 kcal (2) G-P(sol) polarization free energy of solvation -26.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds