Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47298 * 2 1 4 4 N 1.33563 * 125.68529 * 269.69016 * 3 2 1 5 5 C 1.32538 * 109.31086 * 180.26824 * 4 3 2 6 6 C 1.41389 * 131.34360 * 180.02562 * 5 4 3 7 7 C 1.35428 * 119.95449 * 179.97438 * 6 5 4 8 8 C 1.46631 * 118.94110 * 359.97438 * 7 6 5 9 9 C 1.41283 * 120.49321 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00156 * 156.17902 * 9 8 7 11 11 C 1.39697 * 120.00024 * 336.19071 * 9 8 7 12 12 N 1.30991 * 120.00085 * 343.03388 * 11 9 8 13 13 Si 1.86811 * 120.00139 * 163.03559 * 11 9 8 14 14 H 1.48499 * 109.46757 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47025 * 119.99566 * 13 11 9 16 16 H 1.48495 * 109.46867 * 239.99833 * 13 11 9 17 17 C 1.39248 * 119.01056 * 0.03450 * 8 7 6 18 18 N 1.35915 * 120.19742 * 359.92647 * 17 8 7 19 19 C 1.35099 * 125.68462 * 90.00023 * 3 2 1 20 20 Cl 1.73597 * 126.46420 * 359.69957 * 19 3 2 21 21 H 1.09000 * 109.47008 * 60.00037 * 1 2 3 22 22 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47026 * 300.00262 * 1 2 3 24 24 H 1.09003 * 109.46874 * 239.99587 * 2 1 3 25 25 H 1.09007 * 109.46834 * 120.00642 * 2 1 3 26 26 H 1.08001 * 120.02563 * 359.94678 * 6 5 4 27 27 H 1.07992 * 120.53360 * 179.97438 * 7 6 5 28 28 H 0.97004 * 120.00392 * 180.02562 * 12 11 9 29 29 H 1.08002 * 119.89430 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2976 2.1533 -1.0848 5 6 2.7251 3.3509 -0.7112 6 6 3.1294 4.4759 -1.4663 7 6 3.5312 5.6048 -0.8354 8 6 3.5371 5.6347 0.6306 9 6 3.9506 6.7951 1.3224 10 1 3.6096 6.9724 2.3317 11 6 4.8003 7.7134 0.7008 12 7 5.4758 7.3630 -0.3655 13 14 4.9733 9.4410 1.3901 14 1 4.1101 9.5838 2.5900 15 1 6.3890 9.6843 1.7663 16 1 4.5577 10.4282 0.3615 17 6 3.1305 4.5018 1.3308 18 7 2.7337 3.3889 0.6591 19 6 2.2951 2.1637 1.0973 20 17 2.1108 1.6644 2.7497 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5140 0.8900 26 1 3.1181 4.4347 -2.5454 27 1 3.8422 6.4694 -1.4029 28 1 6.0661 8.0004 -0.7969 29 1 3.1289 4.5083 2.4108 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065603.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = 40.512222 kcal Electronic energy + Delta-G solvation = -15486.875554 eV Core-core repulsion = 12821.539351 eV Total energy + Delta-G solvation = -2665.336203 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.23959 -38.25702 -37.53007 -35.79491 -34.10479 -33.77293 -31.13160 -28.89857 -27.18299 -24.76693 -23.42328 -23.17409 -21.06932 -19.71512 -17.93993 -17.54467 -17.07456 -16.73752 -15.91555 -15.39210 -15.26531 -14.73813 -14.56593 -13.93110 -13.66830 -13.25970 -13.03703 -12.93882 -12.90268 -12.46446 -12.34064 -12.15480 -11.91242 -11.85461 -11.77560 -11.44055 -11.01258 -10.87613 -9.43688 -8.91960 -8.49696 -6.55243 0.34349 0.61789 0.83256 1.39057 1.42751 1.56611 1.93499 2.13936 2.38103 2.52026 3.27606 3.47191 3.87312 4.17647 4.30026 4.47249 4.51931 4.56795 4.69428 4.81519 5.04644 5.08679 5.16328 5.27805 5.39633 5.41793 5.51020 5.87506 5.90983 6.09711 6.38806 6.56632 6.71477 7.09540 8.10600 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.006061 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.236998 B = 4618.940217 C = 5186.703199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 C 0.057 3.943 4 N -0.522 5.522 5 C 0.168 3.832 6 C -0.115 4.115 7 C -0.074 4.074 8 C 0.084 3.916 9 C -0.460 4.460 10 H 0.090 0.910 11 C 0.042 3.958 12 N -0.808 5.808 13 Si 0.992 3.008 14 H -0.258 1.258 15 H -0.265 1.265 16 H -0.258 1.258 17 C -0.195 4.195 18 N -0.301 5.301 19 C -0.079 4.079 20 Cl -0.010 7.010 21 H 0.043 0.957 22 H 0.088 0.912 23 H 0.046 0.954 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.147 0.853 28 H 0.300 0.700 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 -3.650 1.653 5.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 C -0.083 4.083 4 N -0.244 5.244 5 C -0.075 4.075 6 C -0.136 4.136 7 C -0.098 4.098 8 C 0.080 3.920 9 C -0.488 4.488 10 H 0.108 0.892 11 C -0.177 4.177 12 N -0.432 5.432 13 Si 0.812 3.188 14 H -0.181 1.181 15 H -0.190 1.190 16 H -0.183 1.183 17 C -0.319 4.319 18 N 0.032 4.968 19 C -0.221 4.221 20 Cl 0.018 6.982 21 H 0.062 0.938 22 H 0.107 0.893 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.170 0.830 27 H 0.164 0.836 28 H 0.112 0.888 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.490 -3.820 0.884 5.249 hybrid contribution 0.427 1.033 1.354 1.756 sum -3.064 -2.786 2.238 4.707 Atomic orbital electron populations 1.21638 0.93465 1.02887 1.01251 1.19960 0.96858 0.86895 1.03589 1.20905 1.03233 0.98426 0.85741 1.70513 1.22923 1.01788 1.29130 1.20756 1.09749 0.96633 0.80317 1.20190 1.03527 0.89975 0.99860 1.22681 0.95211 0.97573 0.94350 1.18648 0.90234 0.91371 0.91744 1.19698 1.24637 1.02651 1.01814 0.89196 1.26829 0.92158 1.04475 0.94208 1.69836 1.17888 1.38062 1.17383 0.84977 0.79197 0.75062 0.79545 1.18121 1.18975 1.18260 1.21384 1.27136 0.86885 0.96501 1.42044 1.37172 1.09255 1.08361 1.21414 1.23539 0.88895 0.88236 1.98267 1.96740 1.88730 1.14459 0.93773 0.89318 0.93460 0.89816 0.89433 0.82961 0.83576 0.88832 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.89 71.98 0.71 -2.79 15 2 C -0.03 -1.05 6.30 29.85 0.19 -0.86 15 3 C 0.06 2.34 6.31 41.57 0.26 2.61 15 4 N -0.52 -24.22 11.31 -182.02 -2.06 -26.28 15 5 C 0.17 8.20 7.78 134.23 1.04 9.24 15 6 C -0.12 -5.26 10.06 22.40 0.23 -5.03 15 7 C -0.07 -3.52 8.87 23.81 0.21 -3.30 15 8 C 0.08 4.23 5.70 -20.10 -0.11 4.11 15 9 C -0.46 -22.07 9.06 23.37 0.21 -21.86 15 10 H 0.09 4.16 7.90 -2.91 -0.02 4.13 15 11 C 0.04 1.82 5.20 85.17 0.44 2.26 15 12 N -0.81 -36.39 10.88 21.79 0.24 -36.15 15 13 Si 0.99 33.04 29.59 68.60 2.03 35.07 15 14 H -0.26 -8.54 7.11 99.48 0.71 -7.83 15 15 H -0.27 -8.56 7.11 99.48 0.71 -7.85 15 16 H -0.26 -8.18 7.11 99.48 0.71 -7.47 15 17 C -0.20 -9.71 10.72 84.30 0.90 -8.81 15 18 N -0.30 -14.71 2.93 -338.25 -0.99 -15.71 15 19 C -0.08 -3.43 7.58 83.11 0.63 -2.81 15 20 Cl -0.01 -0.35 28.83 -2.72 -0.08 -0.43 15 21 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.09 2.35 7.89 -2.38 -0.02 2.33 15 26 H 0.15 5.99 8.06 -2.91 -0.02 5.97 15 27 H 0.15 6.71 6.27 -2.91 -0.02 6.70 15 28 H 0.30 11.96 8.30 -92.71 -0.77 11.19 15 29 H 0.13 6.43 8.06 -2.91 -0.02 6.41 15 Total: -1.00 -55.69 271.37 5.02 -50.66 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 1.17 Total: 20.07 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 4.72 Total: -27.24 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -2.81 Total: -78.13 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.07 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -55.69 5.02 -50.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065603.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.174 kcal (2) G-P(sol) polarization free energy of solvation -55.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds